We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PDXP
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PDXP
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:204.6 nTPM
HPA Brain:154.0 nTPM
GTEx:204.6 nTPM
FANTOM5:55.8 Scaled Tags Per Million
Pig:44.9 nTPM
Mouse:170.5 nTPM
Allen mouse:13.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.0
Sample id Sample description nTPM
Amygdala
nTPM: 111.3
2814 Male, age 76, right hemisphere 142.1
1987 Female, age 91, left hemisphere 128.4
2517 Female, age 94, left hemisphere 123.0
2514 Male, age 75, right hemisphere 88.8
2695 Female, age 67, right hemisphere 74.1
Basal amygdala
nTPM: 154.0
2243 Female, age 91, right hemisphere 184.2
2827 Female, age 67, right hemisphere 164.6
2685 Female, age 94, left hemisphere 163.7
2110 Male, age 80, left hemisphere 148.0
1955 Male, age 76, both hemispheres 132.5
2609 Male, age 75, right hemisphere 131.0
Central amygdala
nTPM: 142.4
2826 Female, age 94, left hemisphere 197.0
2239 Male, age 80, left hemisphere 155.9
1905 Male, age 76, both hemispheres 127.2
2515 Male, age 75, right hemisphere 117.9
2701 Female, age 91, right hemisphere 113.8
Corticomedial amygdala
nTPM: 145.2
2829 Male, age 80, left hemisphere 178.4
2242 Female, age 91, right hemisphere 159.5
2535 Female, age 67, right hemisphere 152.3
2429 Female, age 94, left hemisphere 138.0
2428 Male, age 75, right hemisphere 123.3
2240 Male, age 76, both hemispheres 119.8
Lateral amygdala
nTPM: 141.5
2534 Female, age 94, left hemisphere 224.1
2256 Male, age 80, left hemisphere 149.5
2255 Female, age 91, right hemisphere 134.1
1883 Male, age 76, both hemispheres 130.6
2830 Female, age 67, right hemisphere 125.4
2516 Male, age 75, right hemisphere 85.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

204.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 204.6
Samples: 181

Max nTPM: 521.9
Min nTPM: 40.8
Std nTPM: 85.9
Median nTPM: 197.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 521.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 483.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 482.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 454.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 415.3
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 380.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 380.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 369.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 369.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 367.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 355.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 347.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 332.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 320.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 316.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 313.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 310.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 307.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 305.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 303.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 301.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 300.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 297.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 296.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 292.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 291.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 290.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 283.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 281.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 280.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 277.6
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 276.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 276.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 276.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 273.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 271.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 270.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 270.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 265.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 256.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 256.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 254.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 253.9
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 251.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 249.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 248.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.1
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 246.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 245.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 245.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 244.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 241.1
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 240.1
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 236.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 236.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 235.5
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 235.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 234.7
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 231.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 230.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 229.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 229.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 229.3
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 229.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 226.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 224.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 223.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 223.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 221.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 219.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 219.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 219.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 219.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 218.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 218.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 218.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 216.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 215.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 214.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 212.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 210.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 210.3
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 205.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 205.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 204.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 203.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 201.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 200.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 198.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 197.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 197.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 194.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 193.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 193.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 192.4
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 191.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 191.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 189.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 188.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 187.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 185.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 185.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 185.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 182.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 181.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 181.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 179.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 178.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 178.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 177.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 176.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 175.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 175.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 173.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 173.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 172.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 170.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 169.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 168.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 160.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 160.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 159.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 158.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 157.9
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 157.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 156.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 151.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 150.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 150.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 149.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 147.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 146.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 144.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 143.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 140.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 139.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 139.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 137.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 136.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 135.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 134.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 132.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 131.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 130.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 128.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 126.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 126.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 124.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 122.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 112.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 112.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 110.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 107.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 107.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 106.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 106.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 102.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 98.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 97.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 95.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 95.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 94.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 93.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 93.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 86.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 82.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 79.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 76.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 65.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 52.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 48.7
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 40.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.8
FF:10151-102I7 76 years, female 55.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.9
Pig sample Sample description nTPM
Amygdala
nTPM: 44.9
Samples: 4

Max nTPM: 70.2
Min nTPM: 29.2
Sample A Female 70.2
Sample B Female 29.2
Sample C Male 42.1
Sample D Male 37.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

170.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 170.5
Samples: 4

Max nTPM: 178.2
Min nTPM: 162.1
Sample A Male 173.5
Sample B Male 168.3
Sample C Female 178.2
Sample D Female 162.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.4
69782963 Antisense, RP_050505_04_B02, Mouse strain C57BL/6J (56 days, male) 13.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo