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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:44.3 nTPM
HPA Brain:85.6 nTPM
GTEx:44.3 nTPM
FANTOM5:13.2 Scaled Tags Per Million
Pig:17.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 52.6
2194 Female, age 79, both hemispheres 68.3
1981 Female, age 72, midline 54.7
2565 Male, age 75, midline 49.4
2816 Male, age 47, midline 47.4
2048 Male, age 55, midline 43.3
Cervical spinal cord, dorsal horn
nTPM: 85.6
2297 Male, age 75, both hemispheres 120.3
1877 Male, age 55, unknown 106.4
2069 Male, age 47, both hemispheres 94.8
2721 Male, age 90, both hemispheres 83.1
2296 Male, age 66, both hemispheres 62.2
2173 Female, age 72, unknown 46.5
Cervical spinal cord, ventral horn
nTPM: 50.4
2068 Male, age 55, unknown 70.3
2820 Female, age 79, both hemispheres 69.3
2480 Male, age 75, both hemispheres 58.6
2295 Male, age 66, both hemispheres 48.0
2809 Male, age 90, both hemispheres 32.5
2098 Female, age 72, unknown 24.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

44.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 44.3
Samples: 204

Max nTPM: 123.9
Min nTPM: 18.3
Std nTPM: 18.1
Median nTPM: 40.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 123.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 121.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 100.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 97.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 96.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 95.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 90.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 90.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 87.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 82.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 81.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 78.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 77.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 76.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 75.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 74.6
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 71.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 71.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 69.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 69.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 68.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 67.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 65.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 64.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 64.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 64.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 63.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 63.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 62.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 61.3
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 60.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 59.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 59.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 58.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 57.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 56.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 55.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 54.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 54.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 54.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 53.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 53.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 53.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 53.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 52.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 52.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 52.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 51.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 50.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 50.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 50.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 49.2
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 48.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 48.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 48.6
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 48.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 48.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 47.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 47.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 47.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 47.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 47.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 47.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 46.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 46.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 46.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 45.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 45.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 45.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 45.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 45.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 45.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 44.4
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 44.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 44.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 43.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 43.7
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 43.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 43.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 43.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 43.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 43.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 43.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 43.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 42.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 42.8
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 42.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 42.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 42.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 42.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 42.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 42.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 42.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 42.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 41.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 41.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 41.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 40.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 40.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 39.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 39.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 39.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 39.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 39.2
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 39.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 39.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 39.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 39.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 38.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 38.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 38.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 38.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 37.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 37.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 37.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 37.2
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 36.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 36.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 36.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 36.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 35.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 35.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 35.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 35.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 35.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 34.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 34.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 34.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 34.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 34.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 34.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 34.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 34.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 33.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 33.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 33.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 33.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 33.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 33.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 33.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 33.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 33.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 33.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 32.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 32.7
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 32.5
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 32.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 31.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 31.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 31.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 31.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 31.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 31.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 31.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 31.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 31.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 31.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 31.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 31.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 30.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 30.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 29.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 29.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 29.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 29.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 29.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 29.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 29.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 28.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 28.8
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 28.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 27.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 27.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 27.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 27.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 26.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 26.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 26.6
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 26.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 26.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 25.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 25.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 25.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 24.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 24.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 24.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 24.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 24.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 23.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 23.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 22.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 22.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 22.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 22.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 22.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 21.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 21.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 20.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 18.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

13.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 13.2
FF:10181-103D1 60 years, female 14.8
FF:10159-103A6 76 years, female 11.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 17.2
Samples: 4

Max nTPM: 25.2
Min nTPM: 10.2
Sample A Female 25.2
Sample B Female 12.4
Sample C Male 10.2
Sample D Male 20.9
Ventral spinal cord
nTPM: 14.9
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.3
Sample A Female 15.4
Sample B Female 15.4
Sample C Male 15.3
Sample D Male 13.3

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