MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.8 nTPM
HPA Brain:133.1 nTPM
GTEx:65.8 nTPM
FANTOM5:9.4 Scaled Tags Per Million
Pig:38.7 nTPM
Mouse:116.2 nTPM
Allen mouse:6.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 133.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.7
1827 Male, age 72, unknown 98.1
2666 Male, age 74, left hemisphere 96.3
2586 Male, age 75, left hemisphere 96.0
2828 Female, age 72, unknown 89.2
2219 Male, age 76, both hemispheres 82.3
2019 Male, age 18, unknown 74.3
1870 Female, age 42, unknown 74.0
2411 Female, age 72, unknown 71.1
1833 Male, age 53, unknown 66.0
1830 Male, age 51, unknown 59.7
Dorsal raphe nucleus
nTPM: 70.9
2298 Female, age 72, unknown 86.9
2750 Male, age 76, both hemispheres 76.1
2047 Male, age 72, unknown 71.2
1828 Male, age 53, unknown 63.3
2016 Female, age 72, unknown 57.0
Inferior colliculus
nTPM: 93.4
2097 Female, age 72, unknown 115.0
1848 Female, age 42, unknown 87.5
1890 Male, age 53, unknown 86.1
2849 Male, age 72, unknown 85.0
Median raphe nucleus
nTPM: 93.4
2220 Male, age 76, midline 93.4
Periaquaductal grey, anterior
nTPM: 133.1
2502 Female, age 75, unknown 183.8
1795 Male, age 51, unknown 116.1
1947 Male, age 18, unknown 99.4
Periaquaductal grey, dorsal
nTPM: 83.8
1840 Male, age 53, unknown 103.5
2464 Female, age 72, unknown 80.3
1831 Male, age 72, unknown 79.3
2850 Male, age 76, both hemispheres 72.1
Periaquaductal grey, lateral
nTPM: 70.8
2053 Male, age 18, unknown 88.4
2140 Male, age 76, both hemispheres 74.8
2272 Male, age 74, both hemispheres 49.3
Pretectal area
nTPM: 99.7
1816 Male, age 51, unknown 153.0
1944 Female, age 72, unknown 125.7
1817 Female, age 42, unknown 118.1
2007 Male, age 72, unknown 117.1
2667 Female, age 75, unknown 113.5
1815 Male, age 53, unknown 105.4
2224 Female, age 72, unknown 89.8
2825 Male, age 18, unknown 89.3
2316 Male, age 76, right hemisphere 77.9
2407 Male, age 75, both hemispheres 57.0
2273 Male, age 74, both hemispheres 49.4
Red nucleus
nTPM: 64.9
2584 Male, age 75, left hemisphere 79.0
2785 Male, age 18, unknown 77.0
2588 Male, age 74, left hemisphere 75.2
1821 Female, age 72, unknown 68.6
1954 Female, age 42, unknown 66.5
2769 Male, age 72, unknown 65.3
2503 Female, age 72, unknown 64.1
2227 Male, age 72, unknown 63.7
2823 Male, age 76, right hemisphere 57.3
1904 Male, age 53, unknown 56.5
1865 Male, age 51, unknown 53.7
2725 Female, age 75, unknown 52.2
Substantia nigra
nTPM: 78.4
1889 Female, age 72, unknown 101.2
2665 Male, age 74, both hemispheres 99.8
1916 Female, age 42, unknown 95.5
1941 Male, age 53, unknown 89.2
1851 Male, age 51, unknown 84.4
2241 Male, age 72, unknown 79.0
2409 Female, age 72, unknown 65.7
2583 Male, age 75, right hemisphere 58.9
2699 Male, age 18, unknown 57.0
2590 Female, age 75, unknown 53.2
Superior colliculus
nTPM: 90.4
2087 Female, age 72, unknown 115.7
2261 Male, age 18, unknown 113.9
1796 Male, age 53, unknown 105.5
1895 Male, age 76, right hemisphere 96.5
2664 Male, age 75, both hemispheres 93.9
2668 Female, age 75, unknown 91.5
1839 Male, age 51, unknown 80.6
2587 Male, age 74, left hemisphere 75.6
1913 Female, age 42, unknown 67.8
1995 Male, age 72, unknown 63.3
Ventral tegmental area
nTPM: 83.7
2218 Male, age 76, both hemispheres 100.6
1942 Male, age 51, unknown 90.6
1915 Female, age 42, unknown 83.4
2410 Female, age 72, unknown 82.4
2223 Female, age 72, unknown 74.6
2021 Male, age 53, unknown 70.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.8
Samples: 183

Max nTPM: 253.7
Min nTPM: 11.0
Std nTPM: 39.5
Median nTPM: 61.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 253.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 228.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 182.1
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 165.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 164.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 157.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 147.6
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 143.7
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 139.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 129.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 128.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 9.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 9.4
FF:10158-103A5 76 years, female 9.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.7
Samples: 4

Max nTPM: 46.9
Min nTPM: 10.3
Sample A Female 42.8
Sample B Female 22.8
Sample C Male 46.9
Sample D Male 10.3
Midbrain
nTPM: 38.7
Samples: 4

Max nTPM: 61.4
Min nTPM: 19.7
Sample A Female 19.7
Sample B Female 24.8
Sample C Male 61.4
Sample D Male 49.0
Periaqueductal gray
nTPM: 24.8
Samples: 3

Max nTPM: 31.3
Min nTPM: 21.5
Sample B Female 21.7
Sample C Male 31.3
Sample D Male 21.5
Superior colliculi
nTPM: 35.9
Samples: 4

Max nTPM: 42.0
Min nTPM: 23.0
Sample A Female 42.0
Sample B Female 23.0
Sample C Male 39.5
Sample D Male 39.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 116.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.2
Samples: 4

Max nTPM: 123.6
Min nTPM: 110.4
Sample A Male 118.7
Sample B Male 110.4
Sample C Female 112.1
Sample D Female 123.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.2
69782963 Antisense, RP_050505_04_B02, Mouse strain C57BL/6J (56 days, male) 6.2

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