On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1146.2
nTPM
HPA Brain:
283.4
nTPM
GTEx:
1146.2
nTPM
FANTOM5:
34.4
Scaled Tags Per Million
Macaque:
465.7
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
283.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 252.4
2586
Male, age 75, left hemisphere
285.3
1870
Female, age 42, unknown
280.9
2666
Male, age 74, left hemisphere
269.8
2411
Female, age 72, unknown
259.2
1827
Male, age 72, unknown
253.5
1833
Male, age 53, unknown
251.9
2219
Male, age 76, both hemispheres
246.4
2828
Female, age 72, unknown
234.2
1830
Male, age 51, unknown
233.4
2019
Male, age 18, unknown
209.0
Dorsal raphe nucleus nTPM: 266.5
2298
Female, age 72, unknown
321.0
1828
Male, age 53, unknown
258.7
2047
Male, age 72, unknown
257.2
2016
Female, age 72, unknown
249.8
2750
Male, age 76, both hemispheres
246.0
Inferior colliculus nTPM: 283.4
2849
Male, age 72, unknown
304.4
2097
Female, age 72, unknown
297.5
1848
Female, age 42, unknown
266.1
1890
Male, age 53, unknown
265.7
Median raphe nucleus nTPM: 250.4
2220
Male, age 76, midline
250.4
Periaquaductal grey, anterior nTPM: 271.5
2502
Female, age 75, unknown
322.7
1947
Male, age 18, unknown
253.7
1795
Male, age 51, unknown
238.0
Periaquaductal grey, dorsal nTPM: 267.4
1840
Male, age 53, unknown
317.4
2464
Female, age 72, unknown
257.1
1831
Male, age 72, unknown
248.1
2850
Male, age 76, both hemispheres
247.1
Periaquaductal grey, lateral nTPM: 230.6
2053
Male, age 18, unknown
255.5
2140
Male, age 76, both hemispheres
226.6
2272
Male, age 74, both hemispheres
209.7
Pretectal area nTPM: 230.0
2224
Female, age 72, unknown
276.9
2316
Male, age 76, right hemisphere
247.6
1816
Male, age 51, unknown
246.7
1817
Female, age 42, unknown
242.4
2825
Male, age 18, unknown
241.3
1815
Male, age 53, unknown
225.3
2007
Male, age 72, unknown
223.2
2407
Male, age 75, both hemispheres
215.5
2273
Male, age 74, both hemispheres
211.4
1944
Female, age 72, unknown
208.5
2667
Female, age 75, unknown
191.2
Red nucleus nTPM: 248.9
2503
Female, age 72, unknown
312.3
1821
Female, age 72, unknown
279.0
1865
Male, age 51, unknown
263.3
2725
Female, age 75, unknown
258.6
2584
Male, age 75, left hemisphere
257.4
2769
Male, age 72, unknown
249.8
2227
Male, age 72, unknown
244.7
2785
Male, age 18, unknown
232.8
2588
Male, age 74, left hemisphere
229.7
1904
Male, age 53, unknown
228.9
1954
Female, age 42, unknown
222.3
2823
Male, age 76, right hemisphere
208.3
Substantia nigra nTPM: 265.2
2699
Male, age 18, unknown
319.5
1851
Male, age 51, unknown
306.0
2665
Male, age 74, both hemispheres
299.1
2241
Male, age 72, unknown
279.6
2590
Female, age 75, unknown
261.4
1916
Female, age 42, unknown
260.7
1941
Male, age 53, unknown
241.8
2409
Female, age 72, unknown
235.8
1889
Female, age 72, unknown
227.8
2583
Male, age 75, right hemisphere
220.0
Superior colliculus nTPM: 256.3
2587
Male, age 74, left hemisphere
295.2
1796
Male, age 53, unknown
276.6
2664
Male, age 75, both hemispheres
266.1
1913
Female, age 42, unknown
261.3
1895
Male, age 76, right hemisphere
256.4
1839
Male, age 51, unknown
253.9
1995
Male, age 72, unknown
251.7
2668
Female, age 75, unknown
245.7
2261
Male, age 18, unknown
243.7
2087
Female, age 72, unknown
212.9
Ventral tegmental area nTPM: 262.8
1915
Female, age 42, unknown
293.8
2223
Female, age 72, unknown
274.2
2021
Male, age 53, unknown
264.3
2410
Female, age 72, unknown
258.9
2218
Male, age 76, both hemispheres
244.3
1942
Male, age 51, unknown
241.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1146.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1146.2
Samples: 183
Max nTPM: 3148.1
Min nTPM: 489.8
Std nTPM: 416.6
Median nTPM: 1076.5
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
3148.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3107.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2596.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2469.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2088.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
2050.9
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
2007.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1978.7
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
1974.3
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
1894.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1883.1
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
1765.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1754.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1741.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1731.1
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
1686.6
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
1645.9
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
1644.0
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1643.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1640.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1600.5
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
1574.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1528.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1528.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1526.3
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
1505.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1487.5
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
1480.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1458.1
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
1457.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1437.9
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
1434.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1421.0
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
1417.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1414.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1396.4
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
1383.4
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
1382.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1370.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1365.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1362.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1327.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1320.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1317.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1310.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1306.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1300.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1299.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1286.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1285.4
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
1272.4
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
1270.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1267.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1266.3
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
1261.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
1256.5
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
1253.9
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
1241.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1238.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1237.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1228.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1227.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1227.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1227.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1226.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1212.3
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
1211.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1203.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1201.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1192.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1191.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1185.1
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1184.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1184.4
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
1183.6
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
1177.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1176.5
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
1173.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1173.2
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
1164.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1162.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
1149.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1140.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1138.8
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
1128.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1122.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
1122.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
1115.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
1104.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1091.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1087.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
1076.5
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
1069.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1068.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1058.7
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
1057.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
1047.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
1045.7
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
1043.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
1036.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
1033.2
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
1032.7
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
1018.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
1017.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1007.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
1002.4
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
1000.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
996.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
992.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
986.6
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
982.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
979.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
977.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
970.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
963.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
956.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
945.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
942.6
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
941.0
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
937.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
925.1
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
921.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
914.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
905.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
900.5
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
899.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
886.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
884.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
883.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
878.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
871.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
870.6
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
867.0
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
865.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
864.4
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
862.9
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
860.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
856.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
845.5
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
839.2
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
838.3
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
834.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
831.2
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
830.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
824.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
822.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
817.5
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
815.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
813.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
808.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
801.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
795.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
793.6
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
793.0
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
787.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
782.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
781.4
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
779.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
778.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
770.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
756.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
752.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
750.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
744.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
719.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
707.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
707.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
706.4
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
704.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
700.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
697.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
691.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
673.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
659.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
658.3
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
656.0
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
638.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
589.5
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
588.3
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
565.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
552.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
538.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
489.8
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
465.7
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 465.7
Samples: 1
Max nTPM: 465.7
Min nTPM: 465.7
Sample A
465.7
Midbrain nTPM: 316.6
Samples: 1
Max nTPM: 316.6
Min nTPM: 316.6
Sample A
316.6
Superior colliculi nTPM: 228.4
Samples: 1
Max nTPM: 228.4
Min nTPM: 228.4
Sample A
228.4
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The Human Protein Atlas project is funded
