MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1146.2 nTPM
HPA Brain:282.5 nTPM
GTEx:1146.2 nTPM
FANTOM5:34.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 282.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 251.6
2586 Male, age 75, left hemisphere 284.6
1870 Female, age 42, unknown 280.1
2666 Male, age 74, left hemisphere 268.8
2411 Female, age 72, unknown 258.3
1827 Male, age 72, unknown 252.7
1833 Male, age 53, unknown 251.1
2219 Male, age 76, both hemispheres 246.1
2828 Female, age 72, unknown 233.5
1830 Male, age 51, unknown 232.7
2019 Male, age 18, unknown 208.4
Dorsal raphe nucleus
nTPM: 265.8
2298 Female, age 72, unknown 319.8
1828 Male, age 53, unknown 257.9
2047 Male, age 72, unknown 256.5
2016 Female, age 72, unknown 248.9
2750 Male, age 76, both hemispheres 245.7
Inferior colliculus
nTPM: 282.5
2849 Male, age 72, unknown 303.5
2097 Female, age 72, unknown 296.5
1848 Female, age 42, unknown 265.2
1890 Male, age 53, unknown 264.8
Median raphe nucleus
nTPM: 250.1
2220 Male, age 76, midline 250.1
Periaquaductal grey, anterior
nTPM: 270.6
2502 Female, age 75, unknown 321.7
1947 Male, age 18, unknown 253.0
1795 Male, age 51, unknown 237.3
Periaquaductal grey, dorsal
nTPM: 266.7
1840 Male, age 53, unknown 316.5
2464 Female, age 72, unknown 256.2
1831 Male, age 72, unknown 247.4
2850 Male, age 76, both hemispheres 246.7
Periaquaductal grey, lateral
nTPM: 229.9
2053 Male, age 18, unknown 254.7
2140 Male, age 76, both hemispheres 226.3
2272 Male, age 74, both hemispheres 208.8
Pretectal area
nTPM: 229.3
2224 Female, age 72, unknown 275.8
2316 Male, age 76, right hemisphere 247.3
1816 Male, age 51, unknown 246.1
1817 Female, age 42, unknown 241.6
2825 Male, age 18, unknown 240.5
1815 Male, age 53, unknown 224.8
2007 Male, age 72, unknown 222.5
2407 Male, age 75, both hemispheres 214.8
2273 Male, age 74, both hemispheres 210.5
1944 Female, age 72, unknown 207.9
2667 Female, age 75, unknown 190.7
Red nucleus
nTPM: 248.2
2503 Female, age 72, unknown 311.4
1821 Female, age 72, unknown 278.1
1865 Male, age 51, unknown 262.4
2725 Female, age 75, unknown 257.8
2584 Male, age 75, left hemisphere 256.7
2769 Male, age 72, unknown 249.1
2227 Male, age 72, unknown 244.0
2785 Male, age 18, unknown 232.0
2588 Male, age 74, left hemisphere 229.0
1904 Male, age 53, unknown 228.1
1954 Female, age 42, unknown 221.5
2823 Male, age 76, right hemisphere 208.0
Substantia nigra
nTPM: 264.3
2699 Male, age 18, unknown 318.4
1851 Male, age 51, unknown 305.1
2665 Male, age 74, both hemispheres 297.9
2241 Male, age 72, unknown 278.9
2590 Female, age 75, unknown 260.7
1916 Female, age 42, unknown 259.7
1941 Male, age 53, unknown 241.1
2409 Female, age 72, unknown 235.1
1889 Female, age 72, unknown 227.0
2583 Male, age 75, right hemisphere 219.5
Superior colliculus
nTPM: 255.6
2587 Male, age 74, left hemisphere 294.1
1796 Male, age 53, unknown 275.7
2664 Male, age 75, both hemispheres 265.2
1913 Female, age 42, unknown 260.4
1895 Male, age 76, right hemisphere 256.1
1839 Male, age 51, unknown 253.1
1995 Male, age 72, unknown 250.9
2668 Female, age 75, unknown 244.9
2261 Male, age 18, unknown 243.0
2087 Female, age 72, unknown 212.2
Ventral tegmental area
nTPM: 262.0
1915 Female, age 42, unknown 292.8
2223 Female, age 72, unknown 273.3
2021 Male, age 53, unknown 263.6
2410 Female, age 72, unknown 257.9
2218 Male, age 76, both hemispheres 244.1
1942 Male, age 51, unknown 240.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1146.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1146.2
Samples: 183

Max nTPM: 3148.1
Min nTPM: 489.8
Std nTPM: 416.6
Median nTPM: 1076.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 3148.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3107.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2596.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2469.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 2088.1
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 2050.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 2007.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1978.7
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 1974.3
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1894.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1883.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 34.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.4
FF:10158-103A5 76 years, female 34.4

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