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BETA
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  • SOD2
EVOLUTIONARY MEDULLA OBLONGATA Show tissue menu
BRAIN73 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE11 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX FUSIFORM GYRUS
GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX
OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM SOMATOSENSORY CORTEX
SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:647.4 nTPM
FANTOM5:440.9 Scaled Tags Per Million
Macaque:128.9 nTPM
Mouse:32.9 nTPM
Rat:135.4 nTPM
Pig:97.5 nTPM

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

647.4
Sample id Sample description nTPM
Area postrema
nTPM: 585.0
2799 Male, age 61, both hemispheres 1280.7
2054 Male, age 76, both hemispheres 332.3
2306 Male, age 80, both hemispheres 142.1
Dorsal medullary reticular nucleus
nTPM: 205.0
2088 Male, age 76, both hemispheres 240.5
2040 Female, age 85, both hemispheres 215.9
2373 Male, age 61, both hemispheres 158.6
Dorsal motor vagal complex
nTPM: 184.6
2185 Male, age 76, both hemispheres 221.8
2133 Female, age 91, both hemispheres 216.7
2000 Male, age 74, unknown 212.7
2844 Male, age 55, unknown 200.3
2813 Female, age 72, unknown 186.9
2643 Male, age 74, both hemispheres 165.0
2807 Female, age 85, both hemispheres 149.4
2797 Male, age 61, both hemispheres 123.7
Gigantocellular reticular nuclei, medullary
nTPM: 174.1
2462 Male, age 74, both hemispheres 225.5
2022 Male, age 76, right hemisphere 196.8
1876 Female, age 85, both hemispheres 174.1
2310 Male, age 80, both hemispheres 156.6
2314 Male, age 61, both hemispheres 155.7
2387 Female, age 91, both hemispheres 135.7
Gigantocellular reticular nuclei, pars
nTPM: 173.2
2084 Female, age 85, both hemispheres 195.3
2706 Male, age 80, both hemispheres 176.0
2336 Male, age 61, both hemispheres 168.4
2330 Male, age 80, both hemispheres 163.5
2168 Male, age 76, both hemispheres 163.0
Inferior olive
nTPM: 216.0
2178 Male, age 61, both hemispheres 240.6
2379 Male, age 80, both hemispheres 229.2
2563 Male, age 74, both hemispheres 221.7
2085 Female, age 85, both hemispheres 207.1
2628 Female, age 91, both hemispheres 181.3
Lateral medullary reticular nucleus
nTPM: 248.7
2305 Male, age 74, both hemispheres 309.2
2044 Male, age 76, both hemispheres 301.3
2852 Male, age 80, both hemispheres 246.6
2374 Male, age 61, both hemispheres 219.7
2804 Female, age 91, both hemispheres 217.9
2190 Female, age 85, both hemispheres 197.6
Medial olivary nucleus
nTPM: 279.7
1943 Male, age 61, both hemispheres 348.6
1962 Male, age 76, both hemispheres 288.6
2851 Male, age 80, both hemispheres 285.0
2138 Female, age 91, both hemispheres 196.5
Medial vestibular nucleus
nTPM: 230.7
2134 Male, age 76, both hemispheres 344.4
2624 Male, age 61, both hemispheres 269.2
2801 Male, age 74, both hemispheres 215.2
2093 Male, age 80, both hemispheres 191.6
2743 Female, age 85, both hemispheres 184.1
2803 Female, age 91, both hemispheres 179.7
Motor hypoglossal nucleus
nTPM: 244.2
2277 Male, age 76, both hemispheres 364.6
2182 Male, age 80, both hemispheres 240.6
2125 Female, age 91, both hemispheres 209.8
2461 Male, age 61, both hemispheres 204.2
2132 Female, age 85, both hemispheres 201.8
Nucleus ambiguus
nTPM: 305.2
2071 Male, age 76, both hemispheres 407.2
2096 Female, age 85, both hemispheres 203.1
Nucleus cuneatus
nTPM: 176.9
2808 Female, age 85, both hemispheres 239.5
2564 Male, age 74, both hemispheres 221.9
2100 Male, age 76, both hemispheres 207.9
2131 Male, age 76, both hemispheres 198.1
2562 Male, age 61, both hemispheres 164.1
2376 Male, age 61, both hemispheres 149.8
2805 Female, age 91, both hemispheres 143.7
2381 Male, age 80, both hemispheres 140.2
2380 Male, age 80, both hemispheres 126.7
Nucleus gracilis
nTPM: 173.8
2627 Male, age 74, both hemispheres 245.4
2299 Female, age 85, both hemispheres 147.3
2382 Male, age 80, both hemispheres 128.8
Nucleus raphe obscurus
nTPM: 259.1
2142 Male, age 76, midline 378.9
2800 Male, age 61, midline 232.4
2845 Female, age 85, midline 166.1
Nucleus raphe pallidus
nTPM: 647.4
1924 Male, age 61, midline 1292.2
2183 Male, age 80, midline 382.8
2145 Male, age 76, midline 267.2
Nucleus tractus solitarii
nTPM: 209.0
2656 Male, age 76, both hemispheres 260.3
2307 Male, age 80, both hemispheres 210.2
2191 Female, age 85, both hemispheres 183.0
2144 Female, age 91, right hemisphere 182.5
Parvicellular reticular nuclei
nTPM: 223.7
2119 Male, age 80, both hemispheres 306.8
2095 Male, age 76, both hemispheres 193.9
2558 Male, age 74, both hemispheres 170.5
Parvicellular reticular nuclei, medullary
nTPM: 216.5
2091 Female, age 85, both hemispheres 234.1
2189 Female, age 91, both hemispheres 209.9
2181 Male, age 80, left hemisphere 205.6
Peritrigeminal nucleus
nTPM: 332.2
2136 Male, age 76, both hemispheres 350.4
2067 Female, age 85, both hemispheres 348.6
2179 Male, age 61, both hemispheres 297.6
Prepositus hypoglossal nucleus
nTPM: 226.9
2086 Male, age 80, both hemispheres 266.7
2855 Female, age 85, right hemisphere 187.0
Spinal trigeminal nucleus, caudal
nTPM: 190.5
2447 Male, age 76, both hemispheres 221.2
2390 Female, age 91, both hemispheres 194.2
2642 Male, age 74, both hemispheres 188.0
2308 Male, age 80, both hemispheres 183.7
2312 Male, age 61, both hemispheres 165.4
Spinal trigeminal nucleus, interpolar
nTPM: 228.8
2066 Male, age 76, right hemisphere 310.5
2033 Male, age 80, both hemispheres 299.1
2389 Female, age 91, both hemispheres 189.8
2386 Female, age 85, both hemispheres 188.0
2625 Male, age 61, both hemispheres 156.7
Spinal vestibular nucleus
nTPM: 227.2
2748 Male, age 76, both hemispheres 326.2
2780 Male, age 80, both hemispheres 303.2
2186 Female, age 91, both hemispheres 197.9
2806 Female, age 85, both hemispheres 184.7
2384 Male, age 74, both hemispheres 179.1
2796 Male, age 61, both hemispheres 171.8
Superior vestibular nucleus
nTPM: 294.6
2061 Male, age 76, both hemispheres 392.9
2015 Male, age 80, both hemispheres 265.4
2383 Male, age 74, both hemispheres 225.4
Ventral medullary reticular nucleus
nTPM: 209.6
2060 Male, age 76, both hemispheres 284.1
2372 Male, age 61, both hemispheres 135.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 248.3
1986 Male, age 76, both hemispheres 305.1
2741 Female, age 85, both hemispheres 305.0
2180 Male, age 61, both hemispheres 233.0
2118 Male, age 80, both hemispheres 200.7
2302 Female, age 91, both hemispheres 197.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

440.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 440.9
FF:10174-103C3 60 years, female 581.2
FF:10155-103A2 76 years, female 392.0
FF:10038-101F2 18-64 years, mixed 349.5

MEDULLA OBLONGATA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
Macaque sample Sample description nTPM
Medulla oblongata
nTPM: 128.9
Samples: 1

Max nTPM: 128.9
Min nTPM: 128.9
Sample A 128.9

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.5
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 97.5
Samples: 4

Max nTPM: 104.3
Min nTPM: 83.5
Sample A Female 103.7
Sample B Female 104.3
Sample C Male 98.5
Sample D Male 83.5

MEDULLA OBLONGATA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.9
Mouse sample Sample description nTPM
Medulla oblongata
nTPM: 32.9
Samples: 4

Max nTPM: 36.4
Min nTPM: 30.1
Sample A 36.4
Sample B 35.1
Sample C 30.1
Sample D 30.1

MEDULLA OBLONGATA - Rat RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.4
Rat sample Sample description nTPM
Medulla oblongata
nTPM: 135.4
Samples: 4

Max nTPM: 156.0
Min nTPM: 122.5
Sample A 122.5
Sample A 136.5
Sample A 156.0
Sample A 126.7

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