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FUCA2
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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:12.4 nTPM
HPA:12.4 nTPM
GTEx:13.5 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:29.6 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA031659Antibody HPA031661
Glial cells LowNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.2
1911 Female, age 85, right hemisphere 13.3
2529 Female, age 94, left hemisphere 12.2
1855 Male, age 76, left hemisphere 12.1
1898 Male, age 80, left hemisphere 12.1
2621 Female, age 67, right hemisphere 11.9
2148 Female, age 91, left hemisphere 11.8
Dentate gyrus
nTPM: 12.3
2528 Male, age 74, both hemispheres 13.6
2246 Female, age 85, both hemispheres 12.6
2010 Male, age 76, both hemispheres 12.4
1927 Female, age 91, both hemispheres 12.1
2531 Female, age 67, both hemispheres 12.1
2530 Female, age 94, left hemisphere 11.0
Entorhinal gyrus
nTPM: 11.6
2117 Female, age 91, right hemisphere 14.8
1938 Female, age 85, left hemisphere 11.5
2764 Male, age 80, right hemisphere 11.5
2613 Female, age 94, left hemisphere 10.8
1787 Male, age 76, left hemisphere 10.5
2686 Male, age 75, right hemisphere 10.5
Hippocampus, CA1
nTPM: 11.6
1873 Female, age 85, both hemispheres 12.3
2082 Female, age 91, right hemisphere 12.3
2527 Male, age 74, both hemispheres 12.0
2045 Male, age 76, both hemispheres 10.9
2749 Male, age 80, left hemisphere 10.3
Hippocampus, CA2
nTPM: 12.4
2249 Male, age 74, both hemispheres 14.3
2113 Female, age 91, right hemisphere 13.5
2437 Female, age 94, left hemisphere 12.6
1940 Female, age 85, left hemisphere 12.4
1963 Male, age 80, left hemisphere 12.3
1892 Male, age 76, both hemispheres 9.3
Hippocampus, CA3
nTPM: 12.2
2436 Male, age 74, both hemispheres 16.7
1891 Female, age 85, both hemispheres 13.4
2620 Female, age 94, left hemisphere 11.9
1867 Male, age 76, both hemispheres 10.8
2861 Female, age 67, both hemispheres 10.4
2137 Male, age 80, left hemisphere 10.2
Parahippocampal cortex
nTPM: 11.7
2692 Male, age 74, both hemispheres 12.4
2250 Female, age 67, right hemisphere 12.3
1990 Female, age 91, right hemisphere 12.0
2693 Female, age 94, both hemispheres 12.0
2018 Male, age 76, both hemispheres 11.8
1933 Female, age 85, both hemispheres 11.7
2532 Female, age 72, left hemisphere 11.6
1850 Male, age 80, both hemispheres 11.3
2245 Female, age 91, both hemispheres 10.9
2622 Female, age 67, right hemisphere 10.7
Perirhinal gyrus
nTPM: 10.8
1841 Female, age 85, right hemisphere 11.3
2848 Male, age 76, right hemisphere 11.2
1847 Female, age 91, left hemisphere 10.9
2521 Female, age 94, right hemisphere 10.7
1794 Male, age 80, right hemisphere 10.0
Subiculum
nTPM: 12.1
2729 Female, age 91, right hemisphere 13.8
2042 Male, age 76, both hemispheres 13.0
1977 Female, age 85, both hemispheres 12.4
1901 Male, age 80, both hemispheres 12.0
2619 Male, age 74, both hemispheres 11.8
2438 Female, age 94, left hemisphere 9.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.5
Samples: 197

Max nTPM: 32.9
Min nTPM: 6.6
Std nTPM: 3.5
Median nTPM: 13.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 32.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 21.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 21.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 20.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 20.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 20.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 20.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 20.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 19.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 19.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 19.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 19.2
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 18.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 18.4
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 18.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 18.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 17.8
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 17.8
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 17.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 17.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 17.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 17.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 16.7
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 16.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.4
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 16.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 16.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 16.3
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 16.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 16.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 16.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 16.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 16.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 16.1
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 16.0
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 16.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 16.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 16.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 16.0
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 15.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 15.9
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 15.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 15.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 15.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 15.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 15.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 15.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 15.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 15.5
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 15.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 15.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 15.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 15.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 15.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 15.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 15.1
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 15.1
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 15.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 14.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 14.9
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 14.9
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 14.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 14.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 14.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 14.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 14.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 14.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 14.4
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 14.3
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 14.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 14.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 14.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 14.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 14.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 14.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 14.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 14.0
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 14.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 14.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 13.9
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 13.8
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 13.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 13.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 13.7
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 13.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 13.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 13.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 13.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 13.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 13.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 13.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 13.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 13.2
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 13.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 13.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 13.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 13.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 13.0
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 12.9
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 12.8
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 12.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 12.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 12.7
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 12.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 12.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 12.6
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 12.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 12.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 12.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 12.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 12.3
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 12.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 12.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 12.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 12.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 12.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 12.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 12.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 12.0
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 12.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 12.0
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 11.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 11.9
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 11.9
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 11.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 11.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 11.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 11.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 11.7
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 11.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 11.7
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 11.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 11.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 11.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 11.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 11.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 11.5
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 11.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 11.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 11.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 11.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 11.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 11.0
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 11.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 10.9
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 10.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 10.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 10.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 10.8
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 10.8
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 10.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 10.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 10.6
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 10.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 10.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 10.4
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 10.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 10.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 10.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 10.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 10.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 10.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 10.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 10.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 10.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 10.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 9.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 9.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 9.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 9.8
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 9.7
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 9.7
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 9.7
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 9.6
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 9.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 9.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 9.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 9.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 9.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 9.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 8.9
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 8.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 8.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 8.7
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 8.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 8.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 8.0
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 7.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 7.8
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 7.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 7.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 6.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 6.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.4
FF:10153-102I9 76 years, female 41.0
FF:10169-103B7 60 years, female 39.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 19.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 14.7
Sample A Female 24.3
Sample B Female 18.6
Sample C Male 22.1
Sample D Male 14.7
Entorhinal cortex
nTPM: 12.8
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.7
Sample A Female 15.1
Sample B Female 14.1
Sample C Male 13.3
Sample D Male 8.7
Subiculum
nTPM: 17.3
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.0
Sample A Female 20.1
Sample B Female 19.0
Sample C Male 15.1
Sample D Male 15.0
Ventral hippocampus
nTPM: 17.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.7
Sample A Female 19.5
Sample B Female 17.3
Sample C Male 17.2
Sample D Male 16.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 29.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.6
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 28.7
Sample C Female 29.9
Sample D Female 31.6
Hippocampal formation
nTPM: 28.5
Samples: 4

Max nTPM: 33.5
Min nTPM: 25.4
Sample A Male 28.0
Sample B Male 27.0
Sample C Female 25.4
Sample D Female 33.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
75990609 Antisense, RP_060608_01_E04, Mouse strain C57BL/6J (56 days, male) 1.2

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