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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:12.7 nTPM
HPA:12.7 nTPM
GTEx:13.6 nTPM
FANTOM5:40.4 Scaled Tags Per Million
Pig:19.9 nTPM
Mouse:29.6 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA031659Antibody HPA031661
Glial cells LowNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Hippocampus
nTPM: 12.7
1911 Female, age 85, right hemisphere 13.4
2860 Male, age 74, right hemisphere 12.9
1898 Male, age 80, left hemisphere 12.7
2529 Female, age 94, left hemisphere 12.7
1855 Male, age 76, left hemisphere 12.6
2148 Female, age 91, left hemisphere 12.4
2621 Female, age 67, right hemisphere 12.3
Dentate gyrus
nTPM: 12.7
2528 Male, age 74, both hemispheres 14.0
2010 Male, age 76, both hemispheres 12.9
2246 Female, age 85, both hemispheres 12.8
1927 Female, age 91, both hemispheres 12.7
2531 Female, age 67, both hemispheres 12.4
2530 Female, age 94, left hemisphere 11.5
Entorhinal gyrus
nTPM: 12.1
2117 Female, age 91, right hemisphere 15.4
2764 Male, age 80, right hemisphere 12.1
1938 Female, age 85, left hemisphere 11.7
2613 Female, age 94, left hemisphere 11.3
1787 Male, age 76, left hemisphere 11.0
2686 Male, age 75, right hemisphere 10.8
Hippocampus, CA1
nTPM: 12.4
2343 Female, age 94, left hemisphere 14.6
2082 Female, age 91, right hemisphere 12.9
1873 Female, age 85, both hemispheres 12.5
2527 Male, age 74, both hemispheres 12.5
2045 Male, age 76, both hemispheres 11.4
2749 Male, age 80, left hemisphere 10.9
Hippocampus, CA2
nTPM: 12.0
2113 Female, age 91, right hemisphere 14.1
2437 Female, age 94, left hemisphere 13.2
1963 Male, age 80, left hemisphere 12.9
1940 Female, age 85, left hemisphere 12.6
1892 Male, age 76, both hemispheres 9.8
2342 Male, age 74, both hemispheres 9.2
Hippocampus, CA3
nTPM: 12.7
2436 Male, age 74, both hemispheres 17.2
1891 Female, age 85, both hemispheres 13.6
2620 Female, age 94, left hemisphere 12.5
1867 Male, age 76, both hemispheres 11.3
2137 Male, age 80, left hemisphere 10.8
2861 Female, age 67, both hemispheres 10.8
Parahippocampal cortex
nTPM: 12.1
2692 Male, age 74, both hemispheres 12.8
1990 Female, age 91, right hemisphere 12.6
2693 Female, age 94, both hemispheres 12.6
2018 Male, age 76, both hemispheres 12.3
1933 Female, age 85, both hemispheres 12.0
2718 Female, age 67, right hemisphere 12.0
1850 Male, age 80, both hemispheres 11.9
2532 Female, age 72, left hemisphere 11.7
2245 Female, age 91, both hemispheres 11.5
2622 Female, age 67, right hemisphere 11.1
Perirhinal gyrus
nTPM: 11.5
2519 Male, age 75, right hemisphere 12.3
2848 Male, age 76, right hemisphere 11.7
1841 Female, age 85, right hemisphere 11.6
1847 Female, age 91, left hemisphere 11.5
2521 Female, age 94, right hemisphere 11.3
1794 Male, age 80, right hemisphere 10.5
Subiculum
nTPM: 12.5
2729 Female, age 91, right hemisphere 14.4
2042 Male, age 76, both hemispheres 13.6
1901 Male, age 80, both hemispheres 12.6
1977 Female, age 85, both hemispheres 12.6
2619 Male, age 74, both hemispheres 12.3
2702 Female, age 67, right hemisphere 11.7
2438 Female, age 94, left hemisphere 10.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.6
Samples: 197

Max nTPM: 33.2
Min nTPM: 6.6
Std nTPM: 3.5
Median nTPM: 13.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 33.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 23.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 21.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 21.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 20.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 20.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 20.7
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 20.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 20.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 20.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 20.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.4
FF:10153-102I9 76 years, female 41.0
FF:10169-103B7 60 years, female 39.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 19.9
Samples: 4

Max nTPM: 24.3
Min nTPM: 14.7
Sample A Female 24.3
Sample B Female 18.6
Sample C Male 22.1
Sample D Male 14.7
Entorhinal cortex
nTPM: 12.8
Samples: 4

Max nTPM: 15.1
Min nTPM: 8.7
Sample A Female 15.1
Sample B Female 14.1
Sample C Male 13.3
Sample D Male 8.7
Subiculum
nTPM: 17.3
Samples: 4

Max nTPM: 20.1
Min nTPM: 15.0
Sample A Female 20.1
Sample B Female 19.0
Sample C Male 15.1
Sample D Male 15.0
Ventral hippocampus
nTPM: 17.7
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.7
Sample A Female 19.5
Sample B Female 17.3
Sample C Male 17.2
Sample D Male 16.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.6
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.2
Sample A Male 28.2
Sample B Male 28.7
Sample C Female 29.9
Sample D Female 31.6
Hippocampal formation
nTPM: 28.5
Samples: 4

Max nTPM: 33.5
Min nTPM: 25.4
Sample A Male 28.0
Sample B Male 27.0
Sample C Female 25.4
Sample D Female 33.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
75990609 Antisense, RP_060608_01_E04, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.