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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.9 nTPM
HPA:80.9 nTPM
GTEx:121.2 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:32.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.3
2586 Male, age 75, left hemisphere 93.7
2828 Female, age 72, unknown 81.9
2219 Male, age 76, both hemispheres 78.8
1827 Male, age 72, unknown 78.7
2019 Male, age 18, unknown 77.0
1870 Female, age 42, unknown 73.7
1833 Male, age 53, unknown 72.8
2411 Female, age 72, unknown 72.8
2666 Male, age 74, left hemisphere 72.7
1830 Male, age 51, unknown 70.7
Dorsal raphe nucleus
nTPM: 74.6
2047 Male, age 72, unknown 78.9
2298 Female, age 72, unknown 78.6
2750 Male, age 76, both hemispheres 76.1
2593 Female, age 75, unknown 73.8
2304 Female, age 72, unknown 73.2
1828 Male, age 53, unknown 72.7
2408 Male, age 75, both hemispheres 72.2
2016 Female, age 72, unknown 71.3
Inferior colliculus
nTPM: 73.3
1820 Female, age 72, unknown 79.7
2759 Female, age 72, unknown 75.5
2097 Female, age 72, unknown 74.5
1890 Male, age 53, unknown 72.9
2385 Female, age 72, unknown 72.5
1906 Male, age 76, both hemispheres 72.4
1848 Female, age 42, unknown 71.3
2849 Male, age 72, unknown 67.5
Median raphe nucleus
nTPM: 74.0
2220 Male, age 76, midline 75.9
2225 Female, age 72, midline 74.4
2501 Female, age 75, midline 73.9
2317 Male, age 75, midline 73.4
2129 Male, age 18, midline 72.3
Pedunculopontine tegmental nucleus
nTPM: 73.2
2257 Male, age 80, both hemispheres 75.0
1919 Male, age 76, both hemispheres 73.4
1921 Female, age 85, both hemispheres 73.2
2705 Male, age 61, both hemispheres 71.0
Periaquaductal grey, anterior
nTPM: 80.9
2502 Female, age 75, unknown 83.8
1795 Male, age 51, unknown 83.5
1947 Male, age 18, unknown 75.5
Periaquaductal grey, dorsal
nTPM: 74.5
1813 Female, age 42, unknown 82.6
2500 Male, age 75, right hemisphere 78.5
1840 Male, age 53, unknown 74.7
2464 Female, age 72, unknown 73.5
1831 Male, age 72, unknown 72.8
1814 Female, age 72, unknown 72.2
1874 Male, age 51, unknown 71.6
2850 Male, age 76, both hemispheres 70.2
Periaquaductal grey, lateral
nTPM: 69.3
2053 Male, age 18, unknown 71.8
2140 Male, age 76, both hemispheres 69.3
2319 Male, age 74, both hemispheres 66.8
Pretectal area
nTPM: 76.7
1816 Male, age 51, unknown 88.4
2007 Male, age 72, unknown 84.0
1944 Female, age 72, unknown 82.9
1817 Female, age 42, unknown 80.4
1815 Male, age 53, unknown 80.0
2667 Female, age 75, unknown 76.4
2407 Male, age 75, both hemispheres 74.9
2224 Female, age 72, unknown 71.5
2318 Male, age 74, both hemispheres 71.5
2754 Male, age 76, right hemisphere 70.9
2825 Male, age 18, unknown 70.8
2316 Male, age 76, right hemisphere 68.2
Red nucleus
nTPM: 76.8
2588 Male, age 74, left hemisphere 79.7
2769 Male, age 72, unknown 79.7
1904 Male, age 53, unknown 79.0
2227 Male, age 72, unknown 77.8
2725 Female, age 75, unknown 77.6
2785 Male, age 18, unknown 77.4
2503 Female, age 72, unknown 77.1
1865 Male, age 51, unknown 76.7
1954 Female, age 42, unknown 75.4
2584 Male, age 75, left hemisphere 74.8
1821 Female, age 72, unknown 74.0
2823 Male, age 76, right hemisphere 72.6
Substantia nigra
nTPM: 80.7
1916 Female, age 42, unknown 91.8
1851 Male, age 51, unknown 86.1
1889 Female, age 72, unknown 81.9
2665 Male, age 74, both hemispheres 81.1
1786 Male, age 76, right hemisphere 80.1
2583 Male, age 75, right hemisphere 79.5
1941 Male, age 53, unknown 78.8
2699 Male, age 18, unknown 78.6
2590 Female, age 75, unknown 78.1
2409 Female, age 72, unknown 78.0
2241 Male, age 72, unknown 74.0
Superior colliculus
nTPM: 79.2
2087 Female, age 72, unknown 85.0
2261 Male, age 18, unknown 84.7
2739 Male, age 18, unknown 84.5
2664 Male, age 75, both hemispheres 84.2
1796 Male, age 53, unknown 82.9
2668 Female, age 75, unknown 82.8
1995 Male, age 72, unknown 80.6
1913 Female, age 42, unknown 76.1
2587 Male, age 74, left hemisphere 72.6
1839 Male, age 51, unknown 69.9
1895 Male, age 76, right hemisphere 68.0
Ventral tegmental area
nTPM: 77.1
1915 Female, age 42, unknown 82.0
2585 Male, age 75, both hemispheres 81.3
2410 Female, age 72, unknown 80.5
1942 Male, age 51, unknown 78.6
2218 Male, age 76, both hemispheres 78.6
2223 Female, age 72, unknown 77.8
2021 Male, age 53, unknown 74.6
1918 Male, age 72, unknown 72.9
2592 Female, age 75, unknown 72.6
2589 Male, age 74, both hemispheres 71.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 121.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 121.2
Samples: 139

Max nTPM: 261.8
Min nTPM: 45.7
Std nTPM: 34.5
Median nTPM: 117.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 261.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 204.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 195.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 194.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 189.1
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 186.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 183.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 183.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 178.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 177.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 18.3
Sample A Female 30.7
Sample B Female 21.5
Sample C Male 21.8
Sample D Male 18.3
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 22.4
Min nTPM: 16.2
Sample B Female 17.9
Sample C Male 22.4
Sample D Male 16.2
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.5
Sample A Female 27.2
Sample B Female 21.5
Sample C Male 23.5
Sample D Male 17.5
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.3
Sample A Female 24.6
Sample B Female 25.8
Sample C Male 20.9
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.1
Sample A Male 36.8
Sample B Male 29.2
Sample C Female 29.1
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
74881790 Antisense, RP_060315_04_D03, Mouse strain C57BL/6J (56 days, male) 2.3
69528052 Antisense, RP_050421_03_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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