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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:92.7 nTPM
HPA:92.7 nTPM
GTEx:120.3 nTPM
FANTOM5:17.7 Scaled Tags Per Million
Pig:23.1 nTPM
Mouse:32.8 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.3
2586 Male, age 75, left hemisphere 105.2
2828 Female, age 72, unknown 94.4
2219 Male, age 76, both hemispheres 91.0
2019 Male, age 18, unknown 90.1
1827 Male, age 72, unknown 89.8
1870 Female, age 42, unknown 85.7
2411 Female, age 72, unknown 84.8
1833 Male, age 53, unknown 84.7
2666 Male, age 74, left hemisphere 84.6
1830 Male, age 51, unknown 82.6
Dorsal raphe nucleus
nTPM: 87.4
2298 Female, age 72, unknown 90.5
2047 Male, age 72, unknown 90.0
2750 Male, age 76, both hemispheres 88.3
1828 Male, age 53, unknown 84.6
2016 Female, age 72, unknown 83.7
Inferior colliculus
nTPM: 83.4
2097 Female, age 72, unknown 86.5
1890 Male, age 53, unknown 84.8
1848 Female, age 42, unknown 83.2
2849 Male, age 72, unknown 79.0
Median raphe nucleus
nTPM: 88.1
2220 Male, age 76, midline 88.1
Pedunculopontine tegmental nucleus
nTPM: 84.0
1921 Female, age 85, both hemispheres 85.2
2334 Male, age 80, both hemispheres 84.8
2338 Male, age 61, both hemispheres 82.1
Periaquaductal grey, anterior
nTPM: 92.7
1795 Male, age 51, unknown 95.2
2502 Female, age 75, unknown 94.5
1947 Male, age 18, unknown 88.5
Periaquaductal grey, dorsal
nTPM: 84.7
1840 Male, age 53, unknown 86.6
2464 Female, age 72, unknown 85.5
1831 Male, age 72, unknown 84.1
2850 Male, age 76, both hemispheres 82.4
Periaquaductal grey, lateral
nTPM: 84.4
2272 Male, age 74, both hemispheres 87.0
2053 Male, age 18, unknown 84.7
2140 Male, age 76, both hemispheres 81.4
Pretectal area
nTPM: 89.5
1816 Male, age 51, unknown 100.0
1944 Female, age 72, unknown 95.4
2007 Male, age 72, unknown 95.0
1817 Female, age 42, unknown 92.3
1815 Male, age 53, unknown 91.8
2273 Male, age 74, both hemispheres 88.2
2667 Female, age 75, unknown 87.4
2407 Male, age 75, both hemispheres 86.7
2825 Male, age 18, unknown 83.6
2224 Female, age 72, unknown 83.5
2316 Male, age 76, right hemisphere 80.4
Red nucleus
nTPM: 88.6
2588 Male, age 74, left hemisphere 91.6
1904 Male, age 53, unknown 90.8
2769 Male, age 72, unknown 90.7
2785 Male, age 18, unknown 90.4
2503 Female, age 72, unknown 89.1
2227 Male, age 72, unknown 89.0
1865 Male, age 51, unknown 88.5
2725 Female, age 75, unknown 88.4
1954 Female, age 42, unknown 87.4
2584 Male, age 75, left hemisphere 86.6
1821 Female, age 72, unknown 86.4
2823 Male, age 76, right hemisphere 84.7
Substantia nigra
nTPM: 92.6
1916 Female, age 42, unknown 103.6
1851 Male, age 51, unknown 97.8
1889 Female, age 72, unknown 94.3
2665 Male, age 74, both hemispheres 92.9
2699 Male, age 18, unknown 91.6
2583 Male, age 75, right hemisphere 91.3
1941 Male, age 53, unknown 90.6
2409 Female, age 72, unknown 89.9
2590 Female, age 75, unknown 89.0
2241 Male, age 72, unknown 85.3
Superior colliculus
nTPM: 90.6
2261 Male, age 18, unknown 97.9
2087 Female, age 72, unknown 97.6
2664 Male, age 75, both hemispheres 95.8
1796 Male, age 53, unknown 94.6
2668 Female, age 75, unknown 93.5
1995 Male, age 72, unknown 91.6
1913 Female, age 42, unknown 88.1
2587 Male, age 74, left hemisphere 84.5
1839 Male, age 51, unknown 81.8
1895 Male, age 76, right hemisphere 80.2
Ventral tegmental area
nTPM: 90.7
1915 Female, age 42, unknown 93.9
2410 Female, age 72, unknown 92.4
2218 Male, age 76, both hemispheres 90.8
1942 Male, age 51, unknown 90.3
2223 Female, age 72, unknown 90.3
2021 Male, age 53, unknown 86.4

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 120.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.3
Samples: 139

Max nTPM: 259.6
Min nTPM: 45.3
Std nTPM: 34.2
Median nTPM: 115.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 259.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 203.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 194.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 192.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 187.6
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 184.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 181.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 180.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 177.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 176.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 174.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 170.5
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 165.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 164.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 163.4
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 161.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 158.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 158.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 157.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 156.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 154.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 151.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 149.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 148.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 148.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 147.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 146.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 145.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 144.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 144.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 143.2
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 143.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 141.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 139.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 139.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 139.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 137.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 137.3
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 137.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 135.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 135.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 135.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 133.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 133.4
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 132.4
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 131.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 131.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 129.2
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 128.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 128.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 128.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 128.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 127.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 125.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 125.2
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 123.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 123.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 123.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 122.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 122.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 121.8
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 121.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 121.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 121.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 120.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 117.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 117.1
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 116.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 115.9
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 115.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 115.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 115.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 114.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 114.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 114.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 112.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 112.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 111.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 110.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 109.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 109.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 109.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 108.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 108.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 107.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 106.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 104.9
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 104.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 104.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 102.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 102.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 102.0
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 101.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 101.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 101.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 101.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 100.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 100.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 99.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 98.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 98.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 97.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 96.7
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 96.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 95.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 95.2
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 94.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 94.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 94.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 93.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 93.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 92.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 92.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 92.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 91.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 90.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 90.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 90.0
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 89.8
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 89.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 87.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 83.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 81.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 79.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 78.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 76.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 75.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 72.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 69.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 69.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 68.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 65.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 60.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 60.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 59.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 57.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 45.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 17.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.7
FF:10158-103A5 76 years, female 17.7

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 23.1
Pig sample Sample description nTPM
Midbrain
nTPM: 23.1
Samples: 4

Max nTPM: 30.7
Min nTPM: 18.3
Sample A Female 30.7
Sample B Female 21.5
Sample C Male 21.8
Sample D Male 18.3
Periaqueductal gray
nTPM: 18.8
Samples: 3

Max nTPM: 22.4
Min nTPM: 16.2
Sample B Female 17.9
Sample C Male 22.4
Sample D Male 16.2
Substantia nigra
nTPM: 22.4
Samples: 4

Max nTPM: 27.2
Min nTPM: 17.5
Sample A Female 27.2
Sample B Female 21.5
Sample C Male 23.5
Sample D Male 17.5
Superior colliculi
nTPM: 22.7
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.3
Sample A Female 24.6
Sample B Female 25.8
Sample C Male 20.9
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 36.8
Min nTPM: 29.1
Sample A Male 36.8
Sample B Male 29.2
Sample C Female 29.1
Sample D Female 36.0

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
74881790 Antisense, RP_060315_04_D03, Mouse strain C57BL/6J (56 days, male) 2.3
69528052 Antisense, RP_050421_03_A05, Mouse strain C57BL/6J (56 days, male) 0.3

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