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KLHL13
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:10.8 nTPM
HPA:10.8 nTPM
GTEx:12.3 nTPM
FANTOM5:30.6 Scaled Tags Per Million
Pig:57.5 nTPM
Mouse:139.4 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA046039
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 8.9
1857 Female, age 85, left hemisphere 19.1
1854 Male, age 80, left hemisphere 16.2
2846 Female, age 79, unknown 13.0
1781 Male, age 74, unknown 9.0
2713 Male, age 75, left hemisphere 7.0
2481 Female, age 94, left hemisphere 6.0
2301 Female, age 72, unknown 3.9
2306 Female, age 91, right hemisphere 3.7
2302 Male, age 61, right hemisphere 2.3
Claustrum
nTPM: 2.3
2196 Female, age 79, unknown 3.6
2198 Male, age 80, both hemispheres 3.4
2392 Female, age 94, both hemispheres 3.2
2307 Female, age 91, both hemispheres 3.0
2491 Male, age 75, both hemispheres 2.2
2568 Male, age 61, both hemispheres 1.7
2299 Female, age 85, both hemispheres 1.6
1956 Male, age 74, unknown 1.1
2645 Female, age 72, unknown 1.1
Globus pallidus, externus
nTPM: 2.6
2644 Female, age 94, right hemisphere 4.4
2114 Female, age 85, right hemisphere 4.2
2395 Male, age 75, both hemispheres 2.8
2011 Female, age 91, left hemisphere 2.5
1996 Male, age 80, right hemisphere 2.3
2646 Male, age 61, right hemisphere 2.0
2772 Female, age 79, unknown 2.0
2567 Female, age 72, unknown 1.0
Globus pallidus, internus
nTPM: 4.3
1997 Male, age 61, left hemisphere 14.7
1818 Male, age 74, unknown 4.2
2714 Male, age 75, right hemisphere 3.8
2483 Female, age 94, right hemisphere 3.6
2037 Male, age 80, right hemisphere 2.8
2778 Female, age 91, both hemispheres 2.7
2566 Female, age 72, unknown 1.8
2111 Female, age 85, right hemisphere 1.0
Nucleus accumbens
nTPM: 10.8
1856 Female, age 91, right hemisphere 20.9
1806 Female, age 85, left hemisphere 17.6
1783 Male, age 74, unknown 14.3
2824 Male, age 61, right hemisphere 13.7
2698 Female, age 72, unknown 8.8
2732 Male, age 80, right hemisphere 4.9
2391 Female, age 94, left hemisphere 3.8
2305 Male, age 75, left hemisphere 2.6
Nucleus basalis of Meynert
nTPM: 4.3
2393 Male, age 80, right hemisphere 11.2
2484 Female, age 94, left hemisphere 5.6
2821 Male, age 75, both hemispheres 3.5
2200 Female, age 91, left hemisphere 3.4
2300 Female, age 85, both hemispheres 2.5
2842 Male, age 74, unknown 2.0
2569 Male, age 61, both hemispheres 1.7
Nucleus of the diagonal band
nTPM: 4.7
2775 Male, age 80, right hemisphere 6.5
1979 Male, age 74, unknown 5.3
2195 Female, age 85, both hemispheres 4.7
1812 Female, age 91, both hemispheres 4.5
2029 Male, age 61, right hemisphere 2.5
Olfactory tubercle
nTPM: 3.3
2487 Female, age 94, left hemisphere 4.4
1846 Male, age 80, right hemisphere 4.0
1998 Female, age 91, both hemispheres 2.7
2856 Male, age 75, right hemisphere 2.2
Putamen
nTPM: 8.8
1838 Male, age 80, right hemisphere 20.4
1937 Female, age 91, right hemisphere 15.7
2466 Female, age 79, unknown 13.6
1829 Male, age 74, unknown 12.3
2482 Female, age 94, left hemisphere 5.0
2489 Female, age 72, unknown 4.6
2647 Male, age 75, left hemisphere 3.4
2490 Male, age 61, left hemisphere 3.0
2488 Female, age 85, left hemisphere 1.1
Septal nuclei
nTPM: 4.9
2009 Female, age 91, both hemispheres 5.7
1960 Male, age 74, unknown 5.6
2199 Male, age 80, right hemisphere 4.9
2394 Male, age 61, left hemisphere 4.8
2059 Female, age 85, both hemispheres 4.7
2629 Female, age 94, right hemisphere 4.6
2031 Female, age 72, unknown 3.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.3
Samples: 246

Max nTPM: 47.4
Min nTPM: 1.9
Std nTPM: 7.2
Median nTPM: 11.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 47.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 36.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 34.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 30.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 30.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 28.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 28.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 27.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 26.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 26.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 26.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.1
Samples: 246

Max nTPM: 30.7
Min nTPM: 1.5
Std nTPM: 6.4
Median nTPM: 11.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 30.7
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 30.0
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 29.9
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 26.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 25.5
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 25.0
GTEX-UTHO-0011-R6A-SM-3GIJW 60-69 years, male 24.8
GTEX-1I1GV-0011-R6b-SM-ARU6Q 60-69 years, male 24.3
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 24.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 24.1
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 24.0
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Brain - Putamen (basal ganglia)
Average nTPM: 10.1
Samples: 205

Max nTPM: 35.8
Min nTPM: 1.0
Std nTPM: 6.2
Median nTPM: 9.6
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 35.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 26.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 24.1
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 24.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 23.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 22.8
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 22.7
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 22.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 22.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 21.7
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 21.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.6
FF:10164-103B2 76 years, female 30.6
Nucleus accumbens
Scaled Tags Per Million: 18.4
FF:10037-101F1 23-56 years, mixed 18.4
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 57.5
Pig sample Sample description nTPM
Caudate
nTPM: 57.6
Samples: 4

Max nTPM: 65.3
Min nTPM: 49.4
Sample A Female 61.8
Sample B Female 49.4
Sample C Male 65.3
Sample D Male 53.8
Putamen
nTPM: 45.0
Samples: 4

Max nTPM: 69.4
Min nTPM: 31.1
Sample A Female 31.1
Sample B Female 31.9
Sample C Male 69.4
Sample D Male 47.6
Septum
nTPM: 39.6
Samples: 4

Max nTPM: 46.3
Min nTPM: 32.2
Sample A Female 46.3
Sample B Female 37.8
Sample C Male 41.9
Sample D Male 32.2
Ventral pallidum
nTPM: 48.2
Samples: 4

Max nTPM: 53.9
Min nTPM: 38.1
Sample A Female 50.9
Sample B Female 38.1
Sample C Male 53.9
Sample D Male 49.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 139.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 139.4
Samples: 4

Max nTPM: 148.5
Min nTPM: 130.1
Sample A Male 148.5
Sample B Male 139.2
Sample C Female 130.1
Sample D Female 139.7
Septum
nTPM: 77.5
Samples: 4

Max nTPM: 88.9
Min nTPM: 70.4
Sample A Male 72.5
Sample B Male 88.9
Sample C Female 70.4
Sample D Female 78.2
Ventral forebrain
nTPM: 103.2
Samples: 4

Max nTPM: 106.6
Min nTPM: 98.7
Sample A Male 98.7
Sample B Male 105.9
Sample C Female 106.6
Sample D Female 101.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
69735861 Antisense, RP_050503_03_F10, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.7
69735861 Antisense, RP_050503_03_F10, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.