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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Low
Paneth cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:41.8 nTPM
HPA:41.8 nTPM
GTEx:34.2 nTPM
FANTOM5:362.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA005575Antibody CAB020842
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Microvilli -Not detected
Glandular cells High-
Goblet cells -Low
Paneth cells -Low




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 41.8
overview
Male, age 65
Small intestine sample 232
nTPM: 49.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 25.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 36.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 55.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.2
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 34.2
Samples: 187

Max nTPM: 100.2
Min nTPM: 8.6
Std nTPM: 13.9
Median nTPM: 31.1
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 100.2
GTEX-1192X-2526-SM-59868 50-59 years, male 88.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 85.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 78.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 75.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 66.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 63.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 61.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 59.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 59.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 58.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 58.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 57.8
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 56.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 55.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 55.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 53.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 52.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 51.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 50.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 50.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 49.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 49.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 49.0
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 48.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 48.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 47.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 46.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 46.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 46.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 45.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 44.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 44.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 43.9
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 43.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 43.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 42.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 42.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 42.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 41.0
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 40.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 40.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 39.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 39.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 39.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 39.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 39.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 39.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 39.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 38.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 38.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 38.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 38.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 38.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 38.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 37.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 37.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 37.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 36.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 36.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 36.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 36.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 36.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 36.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 35.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 35.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 35.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 35.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 35.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 35.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 35.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 35.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 34.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 34.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 34.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 34.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 34.4
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 34.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 34.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 33.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 33.7
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 33.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 33.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 33.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 32.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 32.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 32.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 32.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 32.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 32.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 31.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 31.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 31.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 31.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 31.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 30.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 30.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 30.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 30.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 30.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 30.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 30.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 30.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 30.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 30.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 30.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 29.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 29.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 29.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 29.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 29.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 29.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 29.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 29.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 29.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 28.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 28.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 28.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 28.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 28.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 28.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 28.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 27.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 27.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 27.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 27.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 27.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 27.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 27.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 27.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 27.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 26.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 26.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 26.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 25.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 25.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 25.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 25.7
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 25.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 25.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 25.3
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 24.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 24.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 24.6
GTEX-ZTSS-0926-SM-59865 40-49 years, male 24.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 24.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 24.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 23.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 23.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 23.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 23.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 23.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 23.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 23.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 23.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 23.2
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 22.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 22.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 22.4
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 21.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 21.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 21.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 21.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 20.9
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 20.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 20.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 20.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 20.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 19.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 19.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 19.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 19.0
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 18.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 18.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 18.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 17.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 16.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 16.1
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 15.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 15.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 15.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 14.6
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 13.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 12.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 8.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 362.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 362.6
FF:10024-101D6 15,40,85 years, mixed 362.6

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