MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:12.8 nTPM
FANTOM5:89.3 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:18.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
1830 Male, age 51, unknown 18.9
1833 Male, age 53, unknown 18.4
2219 Male, age 76, both hemispheres 18.1
1870 Female, age 42, unknown 17.5
1827 Male, age 72, unknown 16.0
2666 Male, age 74, left hemisphere 15.5
2828 Female, age 72, unknown 14.5
2019 Male, age 18, unknown 13.1
2411 Female, age 72, unknown 12.6
2586 Male, age 75, left hemisphere 12.1
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 11.2
2016 Female, age 72, unknown 10.7
2047 Male, age 72, unknown 9.9
2298 Female, age 72, unknown 6.6
Inferior colliculus
nTPM: 19.2
2849 Male, age 72, unknown 24.4
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 15.2
Median raphe nucleus
nTPM: 10.4
2220 Male, age 76, midline 10.4
Pedunculopontine tegmental nucleus
nTPM: 15.2
1921 Female, age 85, both hemispheres 18.0
2338 Male, age 61, both hemispheres 14.4
2334 Male, age 80, both hemispheres 13.2
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 13.5
2502 Female, age 75, unknown 13.3
1795 Male, age 51, unknown 7.6
Periaquaductal grey, dorsal
nTPM: 14.8
1831 Male, age 72, unknown 16.7
1840 Male, age 53, unknown 14.4
2464 Female, age 72, unknown 14.4
2850 Male, age 76, both hemispheres 13.8
Periaquaductal grey, lateral
nTPM: 11.3
2140 Male, age 76, both hemispheres 14.3
2053 Male, age 18, unknown 13.0
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 13.1
2316 Male, age 76, right hemisphere 16.8
1815 Male, age 53, unknown 15.6
2825 Male, age 18, unknown 15.5
2407 Male, age 75, both hemispheres 15.1
1817 Female, age 42, unknown 13.9
2007 Male, age 72, unknown 13.9
2224 Female, age 72, unknown 11.8
1816 Male, age 51, unknown 11.5
1944 Female, age 72, unknown 11.2
2667 Female, age 75, unknown 10.9
2273 Male, age 74, both hemispheres 7.5
Red nucleus
nTPM: 18.7
2503 Female, age 72, unknown 23.4
1821 Female, age 72, unknown 20.4
1865 Male, age 51, unknown 20.0
1954 Female, age 42, unknown 19.6
1904 Male, age 53, unknown 19.0
2588 Male, age 74, left hemisphere 18.8
2823 Male, age 76, right hemisphere 18.6
2769 Male, age 72, unknown 18.0
2227 Male, age 72, unknown 17.7
2725 Female, age 75, unknown 17.2
2584 Male, age 75, left hemisphere 16.8
2785 Male, age 18, unknown 15.4
Substantia nigra
nTPM: 12.0
2665 Male, age 74, both hemispheres 16.9
2583 Male, age 75, right hemisphere 15.2
2590 Female, age 75, unknown 14.3
2699 Male, age 18, unknown 14.3
1889 Female, age 72, unknown 14.1
2409 Female, age 72, unknown 12.5
1851 Male, age 51, unknown 11.4
1941 Male, age 53, unknown 8.5
1916 Female, age 42, unknown 7.1
2241 Male, age 72, unknown 6.0
Superior colliculus
nTPM: 15.9
1895 Male, age 76, right hemisphere 23.8
1913 Female, age 42, unknown 19.7
1839 Male, age 51, unknown 18.3
1995 Male, age 72, unknown 17.2
2587 Male, age 74, left hemisphere 15.5
1796 Male, age 53, unknown 15.0
2668 Female, age 75, unknown 14.6
2087 Female, age 72, unknown 13.2
2261 Male, age 18, unknown 11.8
2664 Male, age 75, both hemispheres 9.7
Ventral tegmental area
nTPM: 12.5
2223 Female, age 72, unknown 14.1
2410 Female, age 72, unknown 13.7
2218 Male, age 76, both hemispheres 12.5
1942 Male, age 51, unknown 12.2
2021 Male, age 53, unknown 11.6
1915 Female, age 42, unknown 10.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 30.9
Min nTPM: 4.4
Std nTPM: 4.1
Median nTPM: 12.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 20.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 20.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.3
FF:10158-103A5 76 years, female 89.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.8
Pig sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 45.3
Min nTPM: 37.7
Sample A Female 45.3
Sample B Female 41.0
Sample C Male 39.4
Sample D Male 37.7
Periaqueductal gray
nTPM: 36.6
Samples: 3

Max nTPM: 36.7
Min nTPM: 36.5
Sample B Female 36.7
Sample C Male 36.7
Sample D Male 36.5
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 36.1
Sample A Female 36.1
Sample B Female 39.0
Sample C Male 39.2
Sample D Male 45.4
Superior colliculi
nTPM: 39.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.1
Sample A Female 38.7
Sample B Female 34.1
Sample C Male 41.9
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.2
Sample A Male 17.2
Sample B Male 19.1
Sample C Female 20.4
Sample D Female 17.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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