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TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:19.2 nTPM
HPA:19.2 nTPM
GTEx:12.8 nTPM
FANTOM5:89.3 Scaled Tags Per Million
Pig:40.8 nTPM
Mouse:18.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.7
1830 Male, age 51, unknown 18.9
1833 Male, age 53, unknown 18.4
2219 Male, age 76, both hemispheres 18.1
1870 Female, age 42, unknown 17.5
1827 Male, age 72, unknown 16.0
2666 Male, age 74, left hemisphere 15.5
2828 Female, age 72, unknown 14.5
2019 Male, age 18, unknown 13.1
2411 Female, age 72, unknown 12.6
2586 Male, age 75, left hemisphere 12.1
Dorsal raphe nucleus
nTPM: 10.2
2750 Male, age 76, both hemispheres 12.8
1828 Male, age 53, unknown 11.2
2016 Female, age 72, unknown 10.7
2047 Male, age 72, unknown 9.9
2298 Female, age 72, unknown 6.6
Inferior colliculus
nTPM: 19.2
2849 Male, age 72, unknown 24.4
1848 Female, age 42, unknown 19.3
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 15.2
Median raphe nucleus
nTPM: 10.4
2220 Male, age 76, midline 10.4
Pedunculopontine tegmental nucleus
nTPM: 15.2
1921 Female, age 85, both hemispheres 18.0
2338 Male, age 61, both hemispheres 14.4
2334 Male, age 80, both hemispheres 13.2
Periaquaductal grey, anterior
nTPM: 11.5
1947 Male, age 18, unknown 13.5
2502 Female, age 75, unknown 13.3
1795 Male, age 51, unknown 7.6
Periaquaductal grey, dorsal
nTPM: 14.8
1831 Male, age 72, unknown 16.7
1840 Male, age 53, unknown 14.4
2464 Female, age 72, unknown 14.4
2850 Male, age 76, both hemispheres 13.8
Periaquaductal grey, lateral
nTPM: 11.3
2140 Male, age 76, both hemispheres 14.3
2053 Male, age 18, unknown 13.0
2272 Male, age 74, both hemispheres 6.5
Pretectal area
nTPM: 13.1
2316 Male, age 76, right hemisphere 16.8
1815 Male, age 53, unknown 15.6
2825 Male, age 18, unknown 15.5
2407 Male, age 75, both hemispheres 15.1
1817 Female, age 42, unknown 13.9
2007 Male, age 72, unknown 13.9
2224 Female, age 72, unknown 11.8
1816 Male, age 51, unknown 11.5
1944 Female, age 72, unknown 11.2
2667 Female, age 75, unknown 10.9
2273 Male, age 74, both hemispheres 7.5
Red nucleus
nTPM: 18.7
2503 Female, age 72, unknown 23.4
1821 Female, age 72, unknown 20.4
1865 Male, age 51, unknown 20.0
1954 Female, age 42, unknown 19.6
1904 Male, age 53, unknown 19.0
2588 Male, age 74, left hemisphere 18.8
2823 Male, age 76, right hemisphere 18.6
2769 Male, age 72, unknown 18.0
2227 Male, age 72, unknown 17.7
2725 Female, age 75, unknown 17.2
2584 Male, age 75, left hemisphere 16.8
2785 Male, age 18, unknown 15.4
Substantia nigra
nTPM: 12.0
2665 Male, age 74, both hemispheres 16.9
2583 Male, age 75, right hemisphere 15.2
2590 Female, age 75, unknown 14.3
2699 Male, age 18, unknown 14.3
1889 Female, age 72, unknown 14.1
2409 Female, age 72, unknown 12.5
1851 Male, age 51, unknown 11.4
1941 Male, age 53, unknown 8.5
1916 Female, age 42, unknown 7.1
2241 Male, age 72, unknown 6.0
Superior colliculus
nTPM: 15.9
1895 Male, age 76, right hemisphere 23.8
1913 Female, age 42, unknown 19.7
1839 Male, age 51, unknown 18.3
1995 Male, age 72, unknown 17.2
2587 Male, age 74, left hemisphere 15.5
1796 Male, age 53, unknown 15.0
2668 Female, age 75, unknown 14.6
2087 Female, age 72, unknown 13.2
2261 Male, age 18, unknown 11.8
2664 Male, age 75, both hemispheres 9.7
Ventral tegmental area
nTPM: 12.5
2223 Female, age 72, unknown 14.1
2410 Female, age 72, unknown 13.7
2218 Male, age 76, both hemispheres 12.5
1942 Male, age 51, unknown 12.2
2021 Male, age 53, unknown 11.6
1915 Female, age 42, unknown 10.6

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.8
Samples: 139

Max nTPM: 30.9
Min nTPM: 4.4
Std nTPM: 4.1
Median nTPM: 12.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 30.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 23.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 21.9
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 20.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 20.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 20.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 20.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 20.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 19.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 19.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 19.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 18.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.8
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 17.7
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 17.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 17.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.2
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 17.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 16.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 16.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 16.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 16.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 16.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 15.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 15.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 15.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 15.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 15.6
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 15.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 15.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 15.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 15.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 14.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 14.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 14.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 14.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 14.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.1
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 13.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 13.9
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 13.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 13.8
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 13.7
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 13.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 13.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 13.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 13.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 13.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 13.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 13.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 13.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 13.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 13.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 13.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 12.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 12.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 12.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 12.6
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 12.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 12.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 12.4
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 12.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 12.3
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 12.1
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 12.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 11.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 11.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 11.8
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 11.8
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 11.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 11.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 11.7
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 11.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 11.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 11.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 11.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 11.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 11.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 11.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 11.2
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 11.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 11.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 11.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 11.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 10.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 10.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 10.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 10.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 10.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 10.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 10.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 10.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 10.0
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 10.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 9.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 9.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 9.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 9.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 9.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 9.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 9.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 9.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 9.5
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 9.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 9.4
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 9.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 9.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 9.3
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 9.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 9.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 9.1
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 9.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 9.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 9.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 8.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 8.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 8.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 7.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 7.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 7.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 7.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 7.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 7.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 7.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 7.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 7.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 6.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 6.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 6.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 5.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 4.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 89.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.3
FF:10158-103A5 76 years, female 89.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.8
Pig sample Sample description nTPM
Midbrain
nTPM: 40.9
Samples: 4

Max nTPM: 45.3
Min nTPM: 37.7
Sample A Female 45.3
Sample B Female 41.0
Sample C Male 39.4
Sample D Male 37.7
Periaqueductal gray
nTPM: 36.6
Samples: 3

Max nTPM: 36.7
Min nTPM: 36.5
Sample B Female 36.7
Sample C Male 36.7
Sample D Male 36.5
Substantia nigra
nTPM: 39.9
Samples: 4

Max nTPM: 45.4
Min nTPM: 36.1
Sample A Female 36.1
Sample B Female 39.0
Sample C Male 39.2
Sample D Male 45.4
Superior colliculi
nTPM: 39.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 34.1
Sample A Female 38.7
Sample B Female 34.1
Sample C Male 41.9
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 18.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.5
Samples: 4

Max nTPM: 20.4
Min nTPM: 17.2
Sample A Male 17.2
Sample B Male 19.1
Sample C Female 20.4
Sample D Female 17.2

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