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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:71.2 nTPM
HPA:71.2 nTPM
FANTOM5:92.7 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:33.9 nTPM
Allen mouse:2.4 Expression energy

THALAMUS - Annotated protein expression
Pending normal tissue analysis

THALAMUS - HPA Brain RNA-seq
Max nTPM 71.2
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 51.6
2032 Female, age 42, unknown 60.8
2497 Male, age 66, unknown 56.5
2396 Male, age 61, right hemisphere 37.6
Centromedial thalamic nucleus
nTPM: 71.2
2279 Female, age 85, left hemisphere 90.2
2401 Male, age 76, right hemisphere 52.2
Habenula
nTPM: 41.0
2203 Male, age 61, left hemisphere 44.2
2276 Male, age 66, unknown 41.8
2252 Male, age 62, unknown 41.0
1957 Male, age 80, both hemispheres 36.8
Lateral geniculate body
nTPM: 59.3
2575 Female, age 94, right hemisphere 74.4
2841 Male, age 80, both hemispheres 70.5
2857 Male, age 74, right hemisphere 63.4
2035 Female, age 72, unknown 61.5
2659 Male, age 66, unknown 57.4
2399 Male, age 61, left hemisphere 51.3
1953 Male, age 62, unknown 51.2
2106 Female, age 67, right hemisphere 44.6
Lateral thalamic nuclei
nTPM: 61.3
2765 Female, age 67, both hemispheres 69.2
2573 Female, age 94, left hemisphere 66.7
2577 Male, age 74, both hemispheres 63.3
2661 Female, age 72, unknown 62.1
1903 Male, age 76, left hemisphere 45.4
Medial dorsal thalamic nucleus
nTPM: 48.8
2660 Female, age 72, unknown 73.8
2576 Male, age 74, both hemispheres 62.2
2492 Male, age 75, right hemisphere 55.0
1859 Male, age 76, both hemispheres 50.9
1930 Female, age 42, unknown 48.3
1810 Male, age 48, unknown 46.1
2039 Female, age 72, unknown 45.8
2026 Male, age 62, unknown 44.8
2283 Male, age 80, right hemisphere 43.9
2498 Male, age 66, unknown 43.2
2402 Female, age 67, both hemispheres 42.7
2572 Female, age 94, right hemisphere 41.0
1971 Male, age 61, right hemisphere 36.4
Medial geniculate body
nTPM: 58.4
2571 Male, age 75, right hemisphere 81.0
2217 Female, age 72, unknown 62.4
2650 Female, age 94, left hemisphere 62.2
2657 Male, age 74, right hemisphere 60.2
2207 Male, age 80, right hemisphere 55.4
2049 Male, age 76, both hemispheres 47.4
1811 Female, age 42, unknown 40.4
Nucleus reuniens
nTPM: 69.6
2210 Female, age 85, left hemisphere 99.7
2205 Male, age 80, left hemisphere 67.6
2212 Female, age 67, left hemisphere 41.4
Nucleus rhomboideus
nTPM: 64.6
2280 Female, age 85, left hemisphere 99.7
2213 Female, age 67, left hemisphere 52.9
2206 Male, age 80, both hemispheres 41.3
Posterior thalamic nucleus
nTPM: 48.8
2655 Male, age 74, right hemisphere 59.7
2266 Male, age 76, right hemisphere 52.9
2495 Female, age 67, right hemisphere 42.0
2649 Female, age 94, both hemispheres 40.7
Pulvinar
nTPM: 52.3
2724 Male, age 74, right hemisphere 58.1
1899 Female, age 42, unknown 56.3
2499 Male, age 66, unknown 55.2
1972 Male, age 62, unknown 54.0
2398 Male, age 61, left hemisphere 52.8
2582 Female, age 72, unknown 52.7
1932 Male, age 80, right hemisphere 52.5
2214 Male, age 76, right hemisphere 50.6
1929 Male, age 48, unknown 50.5
2496 Female, age 67, right hemisphere 40.4
Subthalamic nucleus
nTPM: 67.9
2056 Female, age 72, unknown 92.0
2282 Male, age 61, both hemispheres 86.6
2216 Male, age 48, unknown 76.1
2124 Male, age 62, unknown 73.6
2779 Female, age 42, unknown 63.3
2658 Male, age 74, both hemispheres 55.8
2275 Male, age 66, unknown 55.6
2406 Female, age 72, unknown 40.1
Ventral posterolateral thalamic nucleus
nTPM: 60.8
2570 Male, age 75, right hemisphere 70.7
2581 Female, age 72, unknown 69.4
2578 Male, age 74, both hemispheres 66.0
2740 Male, age 76, right hemisphere 64.6
2397 Male, age 61, right hemisphere 47.1
2197 Male, age 80, both hemispheres 46.9
Ventral posteromedial thalamic nucleus
nTPM: 59.9
2281 Male, age 75, right hemisphere 78.9
2127 Male, age 76, right hemisphere 69.5
2653 Male, age 74, both hemispheres 62.6
2758 Male, age 80, both hemispheres 49.3
2202 Male, age 61, left hemisphere 39.1
Ventral thalamic nuclei
nTPM: 60.8
2291 Female, age 72, unknown 74.2
2652 Male, age 74, left hemisphere 73.0
2858 Female, age 72, unknown 70.1
2580 Male, age 66, unknown 59.8
1860 Male, age 76, both hemispheres 55.6
1845 Male, age 48, unknown 55.1
2204 Male, age 80, both hemispheres 53.7
2285 Male, age 62, unknown 53.2
1912 Female, age 42, unknown 52.3
Ventromedial nucleus
nTPM: 31.7
1982 Female, age 72, unknown 33.3
1822 Female, age 42, unknown 30.1
Zona incerta
nTPM: 58.8
2215 Male, age 66, unknown 69.0
2663 Female, age 72, unknown 63.5
2403 Male, age 62, unknown 58.1
2822 Male, age 74, right hemisphere 55.9
2208 Male, age 80, right hemisphere 47.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 92.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 92.7
FF:10154-103A1 76 years, female 92.7

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 45.8
Pig sample Sample description nTPM
Thalamus
nTPM: 45.8
Samples: 4

Max nTPM: 66.5
Min nTPM: 31.4
Sample A Female 41.8
Sample B Female 31.4
Sample C Male 43.5
Sample D Male 66.5

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.9
Mouse sample Sample description nTPM
Thalamus
nTPM: 34.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 29.6
Sample A Male 35.7
Sample B Male 29.6
Sample C Female 34.7
Sample D Female 35.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.4
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 2.8
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 2.1

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