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BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1.0 nTPM
HPA Brain:38.3 nTPM
GTEx:1.0 nTPM
FANTOM5:5.0 Scaled Tags Per Million
Pig:42.6 nTPM
Mouse:16.0 nTPM

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000942
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 38.3
Sample id Sample description nTPM
Hippocampus
nTPM: 31.8
2621 Female, age 67, right hemisphere 46.8
1898 Male, age 80, left hemisphere 34.3
2148 Female, age 91, left hemisphere 33.3
1855 Male, age 76, left hemisphere 25.8
1911 Female, age 85, right hemisphere 25.8
2529 Female, age 94, left hemisphere 24.9
Dentate gyrus
nTPM: 32.0
1927 Female, age 91, both hemispheres 41.0
2531 Female, age 67, both hemispheres 35.4
2530 Female, age 94, left hemisphere 32.4
2246 Female, age 85, both hemispheres 29.7
2528 Male, age 74, both hemispheres 28.1
2010 Male, age 76, both hemispheres 25.4
Entorhinal gyrus
nTPM: 37.6
2613 Female, age 94, left hemisphere 64.1
2686 Male, age 75, right hemisphere 37.9
2764 Male, age 80, right hemisphere 36.8
1938 Female, age 85, left hemisphere 34.2
1787 Male, age 76, left hemisphere 33.9
2117 Female, age 91, right hemisphere 19.1
Hippocampus, CA1
nTPM: 36.0
2749 Male, age 80, left hemisphere 58.6
2527 Male, age 74, both hemispheres 38.2
1873 Female, age 85, both hemispheres 32.3
2045 Male, age 76, both hemispheres 25.7
2082 Female, age 91, right hemisphere 24.9
Hippocampus, CA2
nTPM: 33.0
1963 Male, age 80, left hemisphere 42.9
2437 Female, age 94, left hemisphere 40.1
1892 Male, age 76, both hemispheres 35.9
2249 Male, age 74, both hemispheres 29.1
2113 Female, age 91, right hemisphere 25.5
1940 Female, age 85, left hemisphere 24.5
Hippocampus, CA3
nTPM: 36.0
2861 Female, age 67, both hemispheres 47.0
2137 Male, age 80, left hemisphere 41.9
2620 Female, age 94, left hemisphere 39.5
2436 Male, age 74, both hemispheres 31.5
1867 Male, age 76, both hemispheres 30.3
1891 Female, age 85, both hemispheres 25.5
Parahippocampal cortex
nTPM: 37.6
2622 Female, age 67, right hemisphere 44.0
2693 Female, age 94, both hemispheres 43.3
2245 Female, age 91, both hemispheres 42.7
2250 Female, age 67, right hemisphere 41.4
1990 Female, age 91, right hemisphere 41.2
2692 Male, age 74, both hemispheres 37.3
1850 Male, age 80, both hemispheres 35.2
2532 Female, age 72, left hemisphere 34.1
1933 Female, age 85, both hemispheres 33.0
2018 Male, age 76, both hemispheres 23.7
Perirhinal gyrus
nTPM: 38.3
1847 Female, age 91, left hemisphere 49.1
2521 Female, age 94, right hemisphere 45.7
1794 Male, age 80, right hemisphere 35.4
1841 Female, age 85, right hemisphere 33.0
2848 Male, age 76, right hemisphere 28.2
Subiculum
nTPM: 29.9
2438 Female, age 94, left hemisphere 40.1
2619 Male, age 74, both hemispheres 36.8
1977 Female, age 85, both hemispheres 31.4
1901 Male, age 80, both hemispheres 31.2
2729 Female, age 91, right hemisphere 22.1
2042 Male, age 76, both hemispheres 17.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 1.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1.0
Samples: 197

Max nTPM: 5.4
Min nTPM: 0.0
Std nTPM: 1.1
Median nTPM: 0.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 5.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 5.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 4.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 4.6
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 4.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 4.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 4.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 4.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 4.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 3.9
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 3.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 3.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 3.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 3.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 3.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 3.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 2.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 2.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 2.7
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 2.5
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 2.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 2.2
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 2.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 2.0
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 2.0
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 1.8
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 1.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 1.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 1.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 1.6
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 1.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 1.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 1.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1.6
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 1.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 1.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 1.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 1.5
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 1.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1.4
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 1.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 1.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 1.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 1.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 1.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 1.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 1.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 1.2
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 1.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 1.2
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 1.1
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 1.1
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 1.1
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 1.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 1.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 1.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 1.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 1.1
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 1.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1.0
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 1.0
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 1.0
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 1.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 1.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 0.9
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 0.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 0.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 0.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 0.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 0.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 0.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 0.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 0.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 0.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 0.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 0.8
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 0.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 0.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 0.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 0.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 0.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 0.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 0.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 0.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 0.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 0.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 0.6
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 0.6
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 0.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 0.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 0.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 0.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 0.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 0.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 0.6
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 0.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 0.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 0.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 0.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 0.5
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 0.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 0.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 0.5
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 0.5
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 0.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 0.5
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 0.5
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 0.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 0.5
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 0.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 0.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 0.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 0.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 0.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 0.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 0.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 0.5
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 0.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 0.4
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 0.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 0.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 0.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 0.4
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 0.4
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 0.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 0.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 0.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 0.4
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 0.4
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 0.4
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 0.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 0.3
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 0.3
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 0.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 0.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 0.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 0.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 0.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 0.3
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 0.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 0.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 0.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 0.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 0.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 0.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 0.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 0.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 0.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 0.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 0.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 0.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 0.2
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 0.2
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 0.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 0.2
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 0.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 0.2
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 0.2
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 0.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 0.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 0.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 0.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 0.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 0.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 0.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 0.1
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 0.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 0.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 0.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 0.1
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 0.1
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 0.1
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 0.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 0.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 0.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 0.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 0.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 0.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 0.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 0.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 0.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 0.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 0.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 0.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 0.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 0.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 5.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5.0
FF:10153-102I9 76 years, female 6.9
FF:10169-103B7 60 years, female 3.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 42.6
Pig sample Sample description nTPM
Subiculum
nTPM: 26.2
Samples: 4

Max nTPM: 34.7
Min nTPM: 22.5
Sample A Female 34.7
Sample B Female 22.5
Sample C Male 23.8
Sample D Male 23.9
Dorsal hippocampus
nTPM: 16.9
Samples: 4

Max nTPM: 17.6
Min nTPM: 15.3
Sample A Female 17.3
Sample B Female 17.6
Sample C Male 17.4
Sample D Male 15.3
Entorhinal cortex
nTPM: 42.6
Samples: 4

Max nTPM: 49.2
Min nTPM: 40.2
Sample A Female 40.2
Sample B Female 40.2
Sample C Male 49.2
Sample D Male 40.6
Ventral hippocampus
nTPM: 18.5
Samples: 4

Max nTPM: 25.0
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 15.1
Sample C Male 25.0
Sample D Male 20.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 16.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 16.0
Samples: 4

Max nTPM: 22.2
Min nTPM: 12.4
Sample A Male 13.4
Sample B Male 16.0
Sample C Female 12.4
Sample D Female 22.2
Hippocampal formation
nTPM: 7.0
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.6
Sample A Male 8.1
Sample B Male 6.9
Sample C Female 5.6
Sample D Female 7.4

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