We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
FARP2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • FARP2
TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:13.2 nTPM
HPA:13.2 nTPM
GTEx:12.4 nTPM
FANTOM5:26.9 Scaled Tags Per Million
Pig:6.0 nTPM
Mouse:4.0 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA031226
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.2
Sample id Sample description nTPM
Hippocampus
nTPM: 11.8
1855 Male, age 76, left hemisphere 12.4
2621 Female, age 67, right hemisphere 12.3
2529 Female, age 94, left hemisphere 11.9
2148 Female, age 91, left hemisphere 11.7
1911 Female, age 85, right hemisphere 11.3
1898 Male, age 80, left hemisphere 11.1
Dentate gyrus
nTPM: 12.3
2530 Female, age 94, left hemisphere 14.5
2010 Male, age 76, both hemispheres 13.8
2531 Female, age 67, both hemispheres 11.9
2246 Female, age 85, both hemispheres 11.5
1927 Female, age 91, both hemispheres 11.1
2528 Male, age 74, both hemispheres 11.0
Entorhinal gyrus
nTPM: 13.2
2686 Male, age 75, right hemisphere 15.4
2613 Female, age 94, left hemisphere 15.2
2764 Male, age 80, right hemisphere 13.3
1938 Female, age 85, left hemisphere 12.6
1787 Male, age 76, left hemisphere 11.4
2117 Female, age 91, right hemisphere 11.2
Hippocampus, CA1
nTPM: 12.1
2749 Male, age 80, left hemisphere 14.3
2527 Male, age 74, both hemispheres 11.9
2045 Male, age 76, both hemispheres 11.7
1873 Female, age 85, both hemispheres 11.5
2082 Female, age 91, right hemisphere 11.4
Hippocampus, CA2
nTPM: 12.3
1963 Male, age 80, left hemisphere 14.5
1940 Female, age 85, left hemisphere 13.1
2437 Female, age 94, left hemisphere 12.4
2113 Female, age 91, right hemisphere 11.9
2249 Male, age 74, both hemispheres 11.3
1892 Male, age 76, both hemispheres 10.9
Hippocampus, CA3
nTPM: 11.6
2137 Male, age 80, left hemisphere 13.7
1891 Female, age 85, both hemispheres 12.9
1867 Male, age 76, both hemispheres 12.8
2861 Female, age 67, both hemispheres 10.8
2436 Male, age 74, both hemispheres 9.9
2620 Female, age 94, left hemisphere 9.7
Parahippocampal cortex
nTPM: 12.1
2692 Male, age 74, both hemispheres 14.6
2018 Male, age 76, both hemispheres 12.9
2532 Female, age 72, left hemisphere 12.8
2622 Female, age 67, right hemisphere 12.7
1990 Female, age 91, right hemisphere 12.0
1850 Male, age 80, both hemispheres 11.8
2693 Female, age 94, both hemispheres 11.8
2245 Female, age 91, both hemispheres 11.6
1933 Female, age 85, both hemispheres 11.3
2250 Female, age 67, right hemisphere 9.4
Perirhinal gyrus
nTPM: 10.5
1847 Female, age 91, left hemisphere 11.4
2848 Male, age 76, right hemisphere 10.9
2521 Female, age 94, right hemisphere 10.4
1794 Male, age 80, right hemisphere 10.3
1841 Female, age 85, right hemisphere 9.4
Subiculum
nTPM: 13.1
2042 Male, age 76, both hemispheres 15.5
2438 Female, age 94, left hemisphere 14.4
1901 Male, age 80, both hemispheres 13.4
2729 Female, age 91, right hemisphere 12.5
2619 Male, age 74, both hemispheres 11.6
1977 Female, age 85, both hemispheres 10.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.4
Samples: 197

Max nTPM: 31.6
Min nTPM: 3.8
Std nTPM: 3.9
Median nTPM: 12.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 31.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 25.2
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 23.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 23.0
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 21.6
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 20.9
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 20.4
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 20.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 20.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 20.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 19.6
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 19.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 19.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 18.8
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 17.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 17.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 17.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 17.5
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 17.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 17.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 17.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 17.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 17.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 16.9
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 16.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 16.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16.6
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 16.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 16.5
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 16.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 16.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 16.0
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 15.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 15.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 15.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 15.7
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 15.7
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 15.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 15.5
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 15.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 15.3
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 15.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 14.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 14.7
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 14.7
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 14.6
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 14.6
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 14.5
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 14.4
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 14.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 14.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 14.2
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 14.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 14.1
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 14.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 14.0
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 14.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 14.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 13.9
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 13.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 13.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 13.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 13.8
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 13.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 13.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 13.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 13.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 13.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 13.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 13.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 13.4
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 13.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 13.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 13.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 13.3
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 13.1
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 13.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 13.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 12.8
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 12.7
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 12.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 12.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 12.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 12.5
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 12.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 12.4
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 12.4
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 12.4
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 12.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 12.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 12.3
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 12.2
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 12.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 12.1
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 12.1
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 12.0
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 12.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 12.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 12.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 12.0
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 11.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 11.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 11.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 11.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 11.6
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 11.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 11.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 11.5
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 11.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 11.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 11.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 11.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 11.4
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 11.3
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 11.3
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 11.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 11.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 11.3
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 11.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 11.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 11.0
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 11.0
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 11.0
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 10.8
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 10.8
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 10.8
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 10.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 10.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 10.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 10.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 10.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 10.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 10.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 10.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 10.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 10.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 10.2
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 10.2
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 10.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 10.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 10.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 10.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 10.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 10.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 10.0
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 10.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 10.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 10.0
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 9.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 9.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 9.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 9.7
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 9.6
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 9.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 9.5
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 9.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 9.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 9.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 9.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 9.1
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 9.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 9.1
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 9.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 9.0
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 9.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 8.9
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 8.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 8.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 8.6
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 8.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 8.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 8.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 8.3
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 8.2
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 8.2
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 8.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 8.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 7.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 7.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 7.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 7.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 7.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 7.2
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 7.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 7.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 6.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 6.6
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 6.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 6.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 6.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 6.0
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 5.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 5.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 5.2
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 3.8
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 26.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.9
FF:10153-102I9 76 years, female 28.7
FF:10169-103B7 60 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.9
Sample A Female 5.7
Sample B Female 5.7
Sample C Male 5.0
Sample D Male 4.9
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.8
Sample A Female 5.2
Sample B Female 4.8
Sample C Male 5.7
Sample D Male 5.8
Subiculum
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.0
Sample A Female 6.4
Sample B Female 5.3
Sample C Male 5.7
Sample D Male 5.0
Ventral hippocampus
nTPM: 6.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.2
Sample A Female 5.6
Sample B Female 5.2
Sample C Male 7.5
Sample D Male 5.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 4.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 4.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 3.7
Sample A Male 3.7
Sample B Male 3.9
Sample C Female 4.0
Sample D Female 4.2
Hippocampal formation
nTPM: 3.8
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.3
Sample A Male 3.3
Sample B Male 4.1
Sample C Female 4.0
Sample D Female 3.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
68269628 Antisense, RP_041129_01_H10, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.