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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:7.3 nTPM
HPA:7.3 nTPM
GTEx:13.7 nTPM
FANTOM5:4.7 Scaled Tags Per Million
Pig:0.6 nTPM
Mouse:0.2 nTPM
Allen mouse:0.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA027398Antibody HPA027492Antibody HPA028033Antibody CAB013690
Glial cells Not detectedNot detectedNot detectedLow
Neuronal cells LowLowNot detectedNot detected









BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 7.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 5.6
2713 Male, age 75, left hemisphere 12.6
2481 Female, age 94, left hemisphere 7.7
2301 Female, age 72, unknown 7.6
2302 Male, age 61, right hemisphere 7.0
2846 Female, age 79, unknown 5.6
1781 Male, age 74, unknown 3.2
1854 Male, age 80, left hemisphere 3.1
1857 Female, age 85, left hemisphere 1.9
2306 Female, age 91, right hemisphere 1.5
Claustrum
nTPM: 3.1
2568 Male, age 61, both hemispheres 4.8
1956 Male, age 74, unknown 4.2
2392 Female, age 94, both hemispheres 3.4
2491 Male, age 75, both hemispheres 3.4
2198 Male, age 80, both hemispheres 3.2
2196 Female, age 79, unknown 3.1
2645 Female, age 72, unknown 3.0
2299 Female, age 85, both hemispheres 2.2
2307 Female, age 91, both hemispheres 1.2
Globus pallidus, externus
nTPM: 6.5
2644 Female, age 94, right hemisphere 9.1
2646 Male, age 61, right hemisphere 7.7
2395 Male, age 75, both hemispheres 7.5
2772 Female, age 79, unknown 7.2
2011 Female, age 91, left hemisphere 6.6
2567 Female, age 72, unknown 5.7
1996 Male, age 80, right hemisphere 4.1
2114 Female, age 85, right hemisphere 3.8
Globus pallidus, internus
nTPM: 5.0
2111 Female, age 85, right hemisphere 8.7
2483 Female, age 94, right hemisphere 7.2
2778 Female, age 91, both hemispheres 6.7
2714 Male, age 75, right hemisphere 6.2
1818 Male, age 74, unknown 3.6
2566 Female, age 72, unknown 3.6
2037 Male, age 80, right hemisphere 3.0
1997 Male, age 61, left hemisphere 1.2
Nucleus accumbens
nTPM: 2.9
2305 Male, age 75, left hemisphere 6.3
2391 Female, age 94, left hemisphere 5.3
2732 Male, age 80, right hemisphere 2.7
1783 Male, age 74, unknown 2.5
1806 Female, age 85, left hemisphere 1.9
2698 Female, age 72, unknown 1.9
2824 Male, age 61, right hemisphere 1.6
1856 Female, age 91, right hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 4.6
2484 Female, age 94, left hemisphere 6.7
2569 Male, age 61, both hemispheres 6.6
2393 Male, age 80, right hemisphere 6.2
2821 Male, age 75, both hemispheres 5.3
2842 Male, age 74, unknown 3.1
2200 Female, age 91, left hemisphere 2.2
2300 Female, age 85, both hemispheres 2.1
Nucleus of the diagonal band
nTPM: 1.8
1812 Female, age 91, both hemispheres 2.9
2775 Male, age 80, right hemisphere 2.2
2029 Male, age 61, right hemisphere 1.5
1979 Male, age 74, unknown 1.4
2195 Female, age 85, both hemispheres 1.2
Olfactory tubercle
nTPM: 1.8
1846 Male, age 80, right hemisphere 2.9
2487 Female, age 94, left hemisphere 1.7
1998 Female, age 91, both hemispheres 1.3
2856 Male, age 75, right hemisphere 1.3
Putamen
nTPM: 7.3
2647 Male, age 75, left hemisphere 15.9
2482 Female, age 94, left hemisphere 8.6
2488 Female, age 85, left hemisphere 8.1
2490 Male, age 61, left hemisphere 7.8
1829 Male, age 74, unknown 7.4
2489 Female, age 72, unknown 6.4
2466 Female, age 79, unknown 6.0
1937 Female, age 91, right hemisphere 3.0
1838 Male, age 80, right hemisphere 2.3
Septal nuclei
nTPM: 1.9
2199 Male, age 80, right hemisphere 3.9
2394 Male, age 61, left hemisphere 2.0
2009 Female, age 91, both hemispheres 1.9
2629 Female, age 94, right hemisphere 1.8
2059 Female, age 85, both hemispheres 1.6
2031 Female, age 72, unknown 1.5
1960 Male, age 74, unknown 0.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 13.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 11.0
Samples: 246

Max nTPM: 35.7
Min nTPM: 0.8
Std nTPM: 6.5
Median nTPM: 9.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 35.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 33.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 32.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 31.3
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 31.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 25.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 24.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 24.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 24.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 23.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.1
Samples: 246

Max nTPM: 26.9
Min nTPM: 0.0
Std nTPM: 2.8
Median nTPM: 1.3
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 26.9
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 18.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 15.1
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 14.6
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 9.8
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 7.7
GTEX-1I1GQ-0011-R6b-SM-CE6SE 50-59 years, male 7.5
GTEX-Y8DK-0011-R6A-SM-4V6EG 60-69 years, male 7.2
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 7.2
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 6.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 6.2
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Brain - Putamen (basal ganglia)
Average nTPM: 13.7
Samples: 205

Max nTPM: 46.3
Min nTPM: 1.3
Std nTPM: 8.6
Median nTPM: 12.3
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 46.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 45.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 39.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 38.0
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 36.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 35.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 35.2
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 33.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 31.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 31.0
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 30.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 1.5
FF:10164-103B2 76 years, female 1.5
Nucleus accumbens
Scaled Tags Per Million: 4.7
FF:10037-101F1 23-56 years, mixed 4.7
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.6
Pig sample Sample description nTPM
Caudate
nTPM: 0.4
Samples: 4

Max nTPM: 0.6
Min nTPM: 0.2
Sample A Female 0.2
Sample B Female 0.4
Sample C Male 0.6
Sample D Male 0.4
Putamen
nTPM: 0.6
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.9
Sample C Male 0.4
Sample D Male 1.0
Septum
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 0.1
Sample D Male 0.0
Ventral pallidum
nTPM: 0.2
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 0.4
Sample C Male 0.1
Sample D Male 0.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.1
Sample D Female 0.1
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.4
68341340 Antisense, RP_041207_01_D05, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 0.5
68341340 Antisense, RP_041207_01_D05, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.