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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Gradient: Ascending
Enterocytes - Microvilli: High
Goblet cells: Medium
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:46.4 nTPM
HPA:46.4 nTPM
GTEx:24.5 nTPM
FANTOM5:116.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA020518Antibody HPA024264
Endocrine cells -Medium
Enterocytes -Medium
Enterocytes - Gradient -Ascending
Enterocytes - Microvilli -High
Glandular cells High-
Goblet cells -Medium
Paneth cells -Not detected





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 46.4
overview
Male, age 65
Small intestine sample 232
nTPM: 33.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 79.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 32.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 39.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 24.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 24.5
Samples: 187

Max nTPM: 122.3
Min nTPM: 0.0
Std nTPM: 29.1
Median nTPM: 12.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 122.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 122.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 120.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 119.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 108.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 93.9
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 92.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 82.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 79.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 78.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 76.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 76.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 75.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 75.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 73.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 72.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 71.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 70.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 66.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 66.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 64.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 64.1
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 60.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 60.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 60.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 58.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 57.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 57.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 56.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 56.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 54.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 53.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 53.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 53.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 52.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 51.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 50.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 50.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 48.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 47.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 47.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 46.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 45.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 44.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 44.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 42.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 42.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 41.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 41.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 40.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 38.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 38.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 37.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 37.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 37.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 36.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 35.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 35.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 34.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 32.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 32.3
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 31.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 31.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 30.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 30.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 29.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 28.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 27.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 26.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 23.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 23.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 23.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 22.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 22.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 21.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 20.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 19.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 19.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 18.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 18.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 18.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 17.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 17.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 17.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 15.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 14.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 13.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 13.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 13.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 13.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 13.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 13.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 12.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 12.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 12.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 12.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 10.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 8.9
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 8.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 7.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 7.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 7.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 7.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 7.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 6.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 6.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 5.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 5.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 5.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 4.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 3.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 3.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 3.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 2.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 2.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 2.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 2.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 2.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 2.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1.8
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 1.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 1.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 1.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.0
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 0.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 0.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 0.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 0.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.6
GTEX-1192X-2526-SM-59868 50-59 years, male 0.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.5
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 0.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 0.5
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 0.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 0.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 116.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 116.4
FF:10024-101D6 15,40,85 years, mixed 116.4

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