We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PAFAH1B1
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • PAFAH1B1
TISSUE PRIMARY DATA MIDBRAIN Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Midbrain
MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:38.4 nTPM
HPA:38.4 nTPM
GTEx:58.4 nTPM
FANTOM5:120.3 Scaled Tags Per Million
Pig:131.7 nTPM
Mouse:209.1 nTPM
Allen mouse:10.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.0
2586 Male, age 75, left hemisphere 45.1
2666 Male, age 74, left hemisphere 35.1
1827 Male, age 72, unknown 34.2
2411 Female, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 30.0
1870 Female, age 42, unknown 29.1
2019 Male, age 18, unknown 28.5
2828 Female, age 72, unknown 23.3
1833 Male, age 53, unknown 21.6
1830 Male, age 51, unknown 20.0
Dorsal raphe nucleus
nTPM: 28.1
2047 Male, age 72, unknown 32.9
2750 Male, age 76, both hemispheres 32.1
2298 Female, age 72, unknown 30.7
1828 Male, age 53, unknown 28.5
2016 Female, age 72, unknown 16.4
Inferior colliculus
nTPM: 24.1
2097 Female, age 72, unknown 26.7
1890 Male, age 53, unknown 26.5
1848 Female, age 42, unknown 24.8
2849 Male, age 72, unknown 18.3
Median raphe nucleus
nTPM: 38.4
2220 Male, age 76, midline 38.4
Pedunculopontine tegmental nucleus
nTPM: 27.5
2334 Male, age 80, both hemispheres 34.4
1921 Female, age 85, both hemispheres 31.5
2338 Male, age 61, both hemispheres 16.6
Periaquaductal grey, anterior
nTPM: 31.1
1947 Male, age 18, unknown 35.0
2502 Female, age 75, unknown 30.0
1795 Male, age 51, unknown 28.2
Periaquaductal grey, dorsal
nTPM: 20.4
1840 Male, age 53, unknown 23.0
2464 Female, age 72, unknown 20.9
1831 Male, age 72, unknown 20.7
2850 Male, age 76, both hemispheres 17.0
Periaquaductal grey, lateral
nTPM: 13.1
2053 Male, age 18, unknown 18.6
2272 Male, age 74, both hemispheres 12.2
2140 Male, age 76, both hemispheres 8.4
Pretectal area
nTPM: 31.1
1816 Male, age 51, unknown 50.5
1944 Female, age 72, unknown 44.9
1817 Female, age 42, unknown 44.8
2007 Male, age 72, unknown 43.7
1815 Male, age 53, unknown 36.1
2667 Female, age 75, unknown 28.9
2224 Female, age 72, unknown 24.4
2825 Male, age 18, unknown 23.2
2407 Male, age 75, both hemispheres 21.9
2273 Male, age 74, both hemispheres 12.8
2316 Male, age 76, right hemisphere 10.9
Red nucleus
nTPM: 26.3
1821 Female, age 72, unknown 39.0
2725 Female, age 75, unknown 32.0
2588 Male, age 74, left hemisphere 30.4
2584 Male, age 75, left hemisphere 29.7
2503 Female, age 72, unknown 28.7
1954 Female, age 42, unknown 26.3
2785 Male, age 18, unknown 25.3
1865 Male, age 51, unknown 23.6
1904 Male, age 53, unknown 22.2
2769 Male, age 72, unknown 20.9
2227 Male, age 72, unknown 20.4
2823 Male, age 76, right hemisphere 16.7
Substantia nigra
nTPM: 38.0
1916 Female, age 42, unknown 54.3
2241 Male, age 72, unknown 48.8
1941 Male, age 53, unknown 47.0
1889 Female, age 72, unknown 42.7
1851 Male, age 51, unknown 41.8
2583 Male, age 75, right hemisphere 32.7
2409 Female, age 72, unknown 30.9
2665 Male, age 74, both hemispheres 30.3
2699 Male, age 18, unknown 27.3
2590 Female, age 75, unknown 24.2
Superior colliculus
nTPM: 27.0
2668 Female, age 75, unknown 35.0
2087 Female, age 72, unknown 33.2
2261 Male, age 18, unknown 33.0
2664 Male, age 75, both hemispheres 29.4
1796 Male, age 53, unknown 29.2
1895 Male, age 76, right hemisphere 26.2
2587 Male, age 74, left hemisphere 24.6
1839 Male, age 51, unknown 23.8
1913 Female, age 42, unknown 20.1
1995 Male, age 72, unknown 15.6
Ventral tegmental area
nTPM: 31.5
2218 Male, age 76, both hemispheres 39.3
2410 Female, age 72, unknown 37.7
1915 Female, age 42, unknown 37.0
1942 Male, age 51, unknown 28.5
2223 Female, age 72, unknown 25.5
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 58.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.4
Samples: 139

Max nTPM: 137.3
Min nTPM: 35.5
Std nTPM: 17.5
Median nTPM: 53.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 137.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 131.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 122.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 110.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 99.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 93.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 90.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 89.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 88.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 86.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 84.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 84.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 84.2
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 78.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 77.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 77.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 76.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 75.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 75.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 75.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 74.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 74.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 72.6
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 69.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 69.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 68.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 67.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 67.4
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 67.0
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 66.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 66.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 66.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 66.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 65.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 65.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 65.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 65.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 65.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 64.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 63.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 62.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 62.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 61.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 60.7
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 60.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 60.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 59.3
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 58.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 58.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 58.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 57.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 57.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 56.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 56.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 56.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 56.1
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 55.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 55.3
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 55.2
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 55.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 55.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 53.8
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 53.8
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 53.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 53.5
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 53.4
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 53.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 53.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 52.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 52.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 52.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 51.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 51.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 51.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 51.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 51.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 50.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 50.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 50.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 50.4
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 50.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 50.2
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 50.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.0
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 49.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 49.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 49.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 49.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 49.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 49.2
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 49.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 49.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 48.8
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 48.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 48.5
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 48.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 48.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 48.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 47.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 47.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 47.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 47.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 47.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 46.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 46.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 46.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 45.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 45.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 45.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 45.2
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 45.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 45.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 44.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 44.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 44.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 44.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 43.7
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 43.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 43.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 43.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 43.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 42.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 42.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 42.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 41.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 41.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 41.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 41.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 39.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 38.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 38.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 38.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 36.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 35.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 120.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 120.3
FF:10158-103A5 76 years, female 120.3

MIDBRAIN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 131.7
Pig sample Sample description nTPM
Midbrain
nTPM: 131.7
Samples: 4

Max nTPM: 180.8
Min nTPM: 108.4
Sample A Female 108.4
Sample B Female 110.2
Sample C Male 180.8
Sample D Male 127.5
Periaqueductal gray
nTPM: 97.6
Samples: 3

Max nTPM: 112.1
Min nTPM: 83.8
Sample B Female 96.9
Sample C Male 112.1
Sample D Male 83.8
Substantia nigra
nTPM: 113.0
Samples: 4

Max nTPM: 154.4
Min nTPM: 74.1
Sample A Female 154.4
Sample B Female 85.8
Sample C Male 137.6
Sample D Male 74.1
Superior colliculi
nTPM: 130.0
Samples: 4

Max nTPM: 172.7
Min nTPM: 79.7
Sample A Female 138.5
Sample B Female 79.7
Sample C Male 172.7
Sample D Male 129.2

MIDBRAIN - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 209.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 209.1
Samples: 4

Max nTPM: 226.1
Min nTPM: 183.2
Sample A Male 183.2
Sample B Male 220.5
Sample C Female 226.1
Sample D Female 206.5

MIDBRAIN - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 10.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.2
2461 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 20.4
2460 Antisense, RP_Baylor_253954, Mouse strain C57BL/6J (56 days, male) 19.8
71765004 Antisense, RP_050926_02_B09, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.