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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:14.3 nTPM
HPA:14.3 nTPM
GTEx:88.2 nTPM
FANTOM5:160.6 Scaled Tags Per Million
Pig:51.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 14.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 3.8
2565 Male, age 75, midline 13.7
2816 Male, age 47, midline 5.5
1981 Female, age 72, midline 0.0
2048 Male, age 55, midline 0.0
2194 Female, age 79, both hemispheres 0.0
Cervical spinal cord, dorsal horn
nTPM: 10.2
2296 Male, age 66, both hemispheres 44.7
2297 Male, age 75, both hemispheres 8.4
2173 Female, age 72, unknown 5.5
2069 Male, age 47, both hemispheres 2.6
1877 Male, age 55, unknown 0.0
2721 Male, age 90, both hemispheres 0.0
Cervical spinal cord, ventral horn
nTPM: 14.3
2480 Male, age 75, both hemispheres 49.5
2809 Male, age 90, both hemispheres 15.7
2068 Male, age 55, unknown 9.0
2295 Male, age 66, both hemispheres 7.1
2820 Female, age 79, both hemispheres 4.5
2098 Female, age 72, unknown 0.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 88.2
Samples: 159

Max nTPM: 175.9
Min nTPM: 24.5
Std nTPM: 27.6
Median nTPM: 86.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 175.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 165.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 158.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 153.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 146.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 145.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 141.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 138.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 137.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 135.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 133.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 133.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 131.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 127.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 124.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 124.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 123.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 123.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 122.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 121.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 121.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 120.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 117.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 116.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 115.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 115.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 113.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 112.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 111.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 110.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 109.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 108.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 108.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 108.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 107.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 107.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 107.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 107.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 104.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 104.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 104.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 101.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 101.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 100.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 100.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 98.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 98.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 97.6
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 97.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 97.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 96.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 96.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 96.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 96.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 95.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 95.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 94.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 94.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 93.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 93.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 93.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 93.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 92.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 92.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 92.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 92.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 91.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 90.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 89.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 88.8
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 88.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 88.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 88.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 87.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 87.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 87.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 86.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 86.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 85.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 85.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 85.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 84.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 84.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 83.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 82.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 82.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 82.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 81.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 81.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 80.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 80.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 79.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 79.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 78.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 78.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 78.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 77.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 77.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 77.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 77.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 76.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 76.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 75.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 75.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 75.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 74.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 73.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 73.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 72.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 72.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 72.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 71.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 71.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 71.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 71.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 70.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 69.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 69.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 69.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 69.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 68.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 68.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 68.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 66.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 66.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 65.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 65.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 63.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 63.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 63.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 62.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 61.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 61.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 60.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 59.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 59.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 58.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 56.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 55.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 55.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 52.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 49.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 49.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 47.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 45.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 44.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 43.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 43.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 42.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 41.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 39.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 34.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 27.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 24.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 160.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 160.6
FF:10159-103A6 76 years, female 163.3
FF:10181-103D1 60 years, female 157.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 51.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 51.6
Samples: 4

Max nTPM: 62.9
Min nTPM: 43.7
Sample A Female 43.7
Sample B Female 48.2
Sample C Male 62.9
Sample D Male 51.4
Ventral spinal cord
nTPM: 35.5
Samples: 4

Max nTPM: 40.7
Min nTPM: 25.3
Sample A Female 40.7
Sample B Female 25.3
Sample C Male 36.5
Sample D Male 39.3

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