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TRAPPC6A
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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:27.0 nTPM
HPA:27.0 nTPM
GTEx:47.4 nTPM
FANTOM5:4.6 Scaled Tags Per Million

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 27.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 26.7
1981 Female, age 72, midline 28.8
2194 Female, age 79, both hemispheres 27.4
2816 Male, age 47, midline 26.3
2565 Male, age 75, midline 26.0
2048 Male, age 55, midline 25.0
Cervical spinal cord, dorsal horn
nTPM: 26.2
2173 Female, age 72, unknown 31.2
2296 Male, age 66, both hemispheres 30.2
1877 Male, age 55, unknown 26.2
2069 Male, age 47, both hemispheres 25.7
2721 Male, age 90, both hemispheres 22.3
2297 Male, age 75, both hemispheres 21.7
Cervical spinal cord, ventral horn
nTPM: 27.0
2098 Female, age 72, unknown 31.0
2295 Male, age 66, both hemispheres 27.9
2068 Male, age 55, unknown 27.0
2809 Male, age 90, both hemispheres 25.9
2820 Female, age 79, both hemispheres 25.5
2480 Male, age 75, both hemispheres 25.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 47.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 47.4
Samples: 159

Max nTPM: 83.8
Min nTPM: 18.3
Std nTPM: 14.1
Median nTPM: 46.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 83.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 81.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 81.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 79.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 76.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 74.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 73.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 73.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 72.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 72.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 71.8
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 71.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 71.1
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 68.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 68.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 67.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 66.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 66.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 65.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 65.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 65.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 65.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 64.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 63.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 62.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 61.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 61.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 61.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 60.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 59.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 59.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 58.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 58.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 57.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 57.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 56.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 56.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 56.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 55.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 55.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 55.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 54.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 54.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 54.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 54.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 53.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 53.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 53.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 53.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 53.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 53.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 52.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 52.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 52.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 52.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 52.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 51.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 51.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 51.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 51.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 51.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 51.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 51.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 50.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 50.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 50.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 49.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 48.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 48.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 48.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 48.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 48.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 48.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 47.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 47.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 47.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 47.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 47.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 46.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 46.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 45.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 45.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 45.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 45.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 45.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 44.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 44.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 44.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 44.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 44.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 43.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 43.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 43.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 43.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 42.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 42.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 42.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 42.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 42.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 42.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 42.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 42.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 41.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 41.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 41.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 40.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 39.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 39.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 38.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 38.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 38.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 38.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 38.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 37.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 37.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 37.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 37.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 37.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 37.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 35.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 35.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 35.4
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 35.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 34.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 34.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 34.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 34.2
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 33.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 33.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 33.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 33.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 32.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 32.0
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 31.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 31.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 30.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 30.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 30.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 30.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 30.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 30.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 29.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 29.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 28.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 28.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 28.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 28.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 27.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 26.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 25.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 25.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 23.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 23.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 21.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 20.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 20.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 18.3
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 4.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 4.6
FF:10159-103A6 76 years, female 5.4
FF:10181-103D1 60 years, female 3.8

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