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CNTN1
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TISSUE PRIMARY DATA PONS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Pons
PONS - Expression summary
Mouse brain, Intensity
Ponsi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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56.178
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:70.0 nTPM
HPA:70.0 nTPM
FANTOM5:233.4 Scaled Tags Per Million
Pig:276.2 nTPM
Allen mouse:1.4 Expression energy

PONS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

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, antibody HPA070467
Pons mean intensity 56.178
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

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FRONT BACK
Barrington's nucleus -
Koelliker-fuse nucleus -
Motor tregiminal nucleus 11.744
Parabrachial nucleus 33.130
Principle sensory trigeminal nucleus 16.740
Locus coeruleus 33.145
Pontine nucleus 23.801
Vestibular nucleus 8.333
Pontine reticular nucleus, oral 6.882
Lateral lemniscus 56.178
Superior paraolivary nucleus 4.515

PONS - HPA Brain RNA-seq
Max nTPM 70.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 32.4
1984 Male, age 76, both hemispheres 59.1
2301 Female, age 85, both hemispheres 28.6
2188 Female, age 91, both hemispheres 21.7
2090 Male, age 80, both hemispheres 20.1
Dorsal cochlear nucleus
nTPM: 28.0
2802 Male, age 74, right hemisphere 43.7
2187 Female, age 91, both hemispheres 26.7
2370 Male, age 61, both hemispheres 26.4
2378 Male, age 80, both hemispheres 23.0
2058 Male, age 76, both hemispheres 20.0
Dorsal tegmental nucleus
nTPM: 23.7
2083 Male, age 80, both hemispheres 39.0
2326 Male, age 74, both hemispheres 29.2
1936 Male, age 76, left hemisphere 23.1
2358 Male, age 61, both hemispheres 3.4
Dorsolateral tegmental area
nTPM: 33.8
2751 Female, age 85, both hemispheres 48.7
2141 Male, age 76, both hemispheres 42.5
2360 Male, age 74, both hemispheres 39.8
2654 Male, age 80, both hemispheres 38.2
2337 Male, age 61, both hemispheres 0.0
Kolliker-Fuse nucleus
nTPM: 27.6
2315 Male, age 76, right hemisphere 46.2
2163 Male, age 80, both hemispheres 30.8
2793 Female, age 91, left hemisphere 5.9
Lateral lemniscal nuclei
nTPM: 26.8
2169 Male, age 76, both hemispheres 61.1
2746 Female, age 85, left hemisphere 29.4
2036 Male, age 80, both hemispheres 27.8
2453 Male, age 74, right hemisphere 12.8
2320 Female, age 91, left hemisphere 2.9
Lateral parabrachial nucleus
nTPM: 33.5
2139 Female, age 85, right hemisphere 74.6
2013 Male, age 80, both hemispheres 35.6
2792 Male, age 76, both hemispheres 16.9
2790 Male, age 61, both hemispheres 6.8
Lateral vestibular nucleus
nTPM: 26.2
2311 Male, age 80, both hemispheres 27.2
2184 Male, age 76, both hemispheres 25.1
Locus coeruleus
nTPM: 49.7
2014 Male, age 55, unknown 71.7
2788 Male, age 74, unknown 70.0
2123 Female, age 91, both hemispheres 60.7
2317 Female, age 72, unknown 47.3
1980 Male, age 76, both hemispheres 45.8
2162 Male, age 80, both hemispheres 29.3
2720 Male, age 74, both hemispheres 23.3
Medial olivary nucleus
nTPM: 70.0
2138 Female, age 91, both hemispheres 142.3
1943 Male, age 61, both hemispheres 79.8
2851 Male, age 80, both hemispheres 41.5
1962 Male, age 76, both hemispheres 16.6
Medial parabrachial nucleus
nTPM: 29.2
2463 Female, age 85, right hemisphere 44.2
2170 Female, age 91, both hemispheres 29.8
2854 Male, age 80, both hemispheres 29.5
2786 Male, age 76, both hemispheres 26.0
2156 Male, age 61, both hemispheres 16.3
Medial periolivary nuclei
nTPM: 37.9
2063 Male, age 76, both hemispheres 66.4
2791 Male, age 74, right hemisphere 66.3
2171 Female, age 85, both hemispheres 41.5
2081 Male, age 80, both hemispheres 7.9
2458 Female, age 91, both hemispheres 7.6
Motor facial nucleus
nTPM: 36.5
2062 Male, age 76, both hemispheres 62.5
2795 Female, age 91, both hemispheres 49.1
2365 Male, age 74, right hemisphere 40.9
2126 Male, age 61, both hemispheres 26.8
2697 Female, age 85, both hemispheres 20.3
2327 Male, age 80, both hemispheres 19.0
Motor trigeminal nucleus
nTPM: 15.6
2309 Male, age 76, both hemispheres 27.9
2079 Male, age 80, both hemispheres 21.9
2335 Male, age 61, both hemispheres 21.6
2560 Male, age 74, both hemispheres 5.3
2321 Female, age 91, both hemispheres 1.3
Nuclei of the trapezoid body
nTPM: 41.5
2159 Male, age 61, both hemispheres 61.8
1983 Male, age 76, both hemispheres 50.8
2735 Female, age 85, both hemispheres 44.7
2368 Female, age 91, both hemispheres 27.4
2166 Male, age 80, both hemispheres 22.5
Paramedian reticular nucleus
nTPM: 44.6
2050 Female, age 85, both hemispheres 49.4
2057 Male, age 80, both hemispheres 48.9
2313 Male, age 61, both hemispheres 48.5
2052 Male, age 76, both hemispheres 31.7
Pontine nuclei
nTPM: 29.4
1863 Male, age 55, unknown 56.5
2727 Male, age 61, right hemisphere 43.5
1968 Male, age 76, left hemisphere 41.0
2109 Female, age 72, unknown 35.8
2787 Female, age 85, both hemispheres 34.8
2319 Female, age 91, both hemispheres 10.6
2115 Male, age 80, left hemisphere 9.6
2454 Male, age 74, left hemisphere 3.5
Pontine raphe nucleus
nTPM: 60.8
2853 Male, age 76, midline 69.8
2122 Female, age 85, midline 51.9
Posteroventral cochlear nucleus
nTPM: 26.1
2752 Female, age 85, both hemispheres 46.3
2070 Male, age 76, both hemispheres 30.2
2371 Male, age 61, both hemispheres 19.5
2341 Male, age 80, both hemispheres 19.0
2135 Female, age 91, both hemispheres 15.7
Principal sensory trigeminal nucleus
nTPM: 26.9
2158 Male, age 61, both hemispheres 51.8
2008 Male, age 80, left hemisphere 30.6
2324 Male, age 76, both hemispheres 23.2
2367 Female, age 91, left hemisphere 1.8
Reticular pontine nucleus, caudal
nTPM: 18.6
2092 Male, age 76, both hemispheres 47.4
2332 Male, age 80, right hemisphere 18.0
2457 Female, age 91, both hemispheres 5.3
2559 Male, age 74, both hemispheres 3.7
Reticular pontine nucleus, oral
nTPM: 28.1
2012 Female, age 85, both hemispheres 47.4
1939 Male, age 80, both hemispheres 43.6
2167 Male, age 76, both hemispheres 36.7
2366 Female, age 91, both hemispheres 9.8
2361 Male, age 74, both hemispheres 3.2
Reticulotegmental nucleus
nTPM: 29.2
2325 Male, age 76, both hemispheres 47.3
2333 Male, age 80, both hemispheres 28.0
2322 Female, age 91, both hemispheres 26.0
2452 Male, age 74, both hemispheres 15.4
Spinal trigeminal nucleus, oral
nTPM: 32.4
2737 Female, age 85, both hemispheres 43.7
1978 Male, age 76, both hemispheres 36.3
2164 Male, age 80, both hemispheres 17.1
Subcoeruleus area
nTPM: 33.6
1958 Male, age 80, both hemispheres 42.3
2369 Female, age 85, left hemisphere 39.1
2323 Female, age 91, left hemisphere 35.0
2089 Male, age 76, left hemisphere 32.7
2451 Male, age 74, both hemispheres 19.1
Superior olive
nTPM: 34.6
2364 Male, age 74, right hemisphere 61.6
2020 Male, age 76, both hemispheres 43.1
1875 Female, age 85, both hemispheres 41.9
2329 Male, age 80, right hemisphere 18.4
2561 Female, age 91, both hemispheres 8.1
Superior vestibular nucleus
nTPM: 60.2
2383 Male, age 74, both hemispheres 108.9
2015 Male, age 80, both hemispheres 44.0
2061 Male, age 76, both hemispheres 27.8
Ventral periolivary nuclei
nTPM: 38.4
2130 Female, age 85, both hemispheres 60.8
2023 Male, age 76, both hemispheres 44.9
2165 Male, age 80, both hemispheres 41.2
2794 Female, age 91, left hemisphere 6.5
Ventrolateral tegmental area, A5 NE cell group
nTPM: 25.7
1959 Male, age 76, both hemispheres 41.2
2840 Female, age 85, both hemispheres 33.9
2449 Male, age 74, both hemispheres 28.1
2161 Male, age 80, both hemispheres 21.2
2359 Male, age 61, both hemispheres 19.0
2456 Female, age 91, both hemispheres 11.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 233.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 190.3
FF:10182-103D2 60 years, female 205.9
FF:10165-103B3 76 years, female 174.8
Pons
Scaled Tags Per Million: 233.4
FF:10033-101E6 18-54 years, mixed 233.4

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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Average nTPM 276.2
Pig sample Sample description nTPM
Pons
nTPM: 276.2
Samples: 4

Max nTPM: 293.7
Min nTPM: 261.6
Sample A Female 279.5
Sample B Female 261.6
Sample C Male 270.1
Sample D Male 293.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 1.4
416 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 2.4
414 Antisense, RP_Baylor_102695, Mouse strain C57BL/6J (56 days, male) 2.2
74300879 Antisense, RP_051219_03_H12, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.