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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
39.1
nTPM
HPA Brain:
56.2
nTPM
GTEx:
39.1
nTPM
FANTOM5:
48.3
Scaled Tags Per Million
Pig:
64.2
nTPM
Mouse:
93.2
nTPM
Allen mouse:
3.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
56.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 50.8
2019
Male, age 18, unknown
64.4
2586
Male, age 75, left hemisphere
64.0
1870
Female, age 42, unknown
50.7
2411
Female, age 72, unknown
50.2
2828
Female, age 72, unknown
49.0
2666
Male, age 74, left hemisphere
48.5
1827
Male, age 72, unknown
48.4
1833
Male, age 53, unknown
46.9
1830
Male, age 51, unknown
46.8
2219
Male, age 76, both hemispheres
39.3
Dorsal raphe nucleus nTPM: 48.0
2298
Female, age 72, unknown
53.9
2016
Female, age 72, unknown
48.2
2750
Male, age 76, both hemispheres
47.9
1828
Male, age 53, unknown
45.7
2047
Male, age 72, unknown
44.0
Inferior colliculus nTPM: 53.5
2097
Female, age 72, unknown
59.4
1890
Male, age 53, unknown
55.1
1848
Female, age 42, unknown
52.7
2849
Male, age 72, unknown
46.9
Median raphe nucleus nTPM: 46.2
2220
Male, age 76, midline
46.2
Periaquaductal grey, anterior nTPM: 54.4
2502
Female, age 75, unknown
63.8
1947
Male, age 18, unknown
50.4
1795
Male, age 51, unknown
48.8
Periaquaductal grey, dorsal nTPM: 47.5
1840
Male, age 53, unknown
50.8
2464
Female, age 72, unknown
48.3
1831
Male, age 72, unknown
45.6
2850
Male, age 76, both hemispheres
45.5
Periaquaductal grey, lateral nTPM: 45.9
2272
Male, age 74, both hemispheres
50.3
2053
Male, age 18, unknown
45.0
2140
Male, age 76, both hemispheres
42.5
Pretectal area nTPM: 56.2
2007
Male, age 72, unknown
70.6
1816
Male, age 51, unknown
69.9
1817
Female, age 42, unknown
66.9
1944
Female, age 72, unknown
62.3
1815
Male, age 53, unknown
62.0
2667
Female, age 75, unknown
54.7
2273
Male, age 74, both hemispheres
52.3
2224
Female, age 72, unknown
51.4
2316
Male, age 76, right hemisphere
45.8
2825
Male, age 18, unknown
41.8
2407
Male, age 75, both hemispheres
40.6
Red nucleus nTPM: 55.9
1821
Female, age 72, unknown
63.5
2785
Male, age 18, unknown
62.2
2503
Female, age 72, unknown
60.3
1865
Male, age 51, unknown
59.6
1904
Male, age 53, unknown
58.2
1954
Female, age 42, unknown
58.0
2227
Male, age 72, unknown
56.8
2769
Male, age 72, unknown
55.5
2725
Female, age 75, unknown
51.1
2588
Male, age 74, left hemisphere
48.9
2823
Male, age 76, right hemisphere
48.3
2584
Male, age 75, left hemisphere
47.6
Substantia nigra nTPM: 51.0
1889
Female, age 72, unknown
60.2
2583
Male, age 75, right hemisphere
55.1
1851
Male, age 51, unknown
54.6
1916
Female, age 42, unknown
53.9
2241
Male, age 72, unknown
52.5
2665
Male, age 74, both hemispheres
50.0
2409
Female, age 72, unknown
49.3
1941
Male, age 53, unknown
47.3
2590
Female, age 75, unknown
44.6
2699
Male, age 18, unknown
43.2
Superior colliculus nTPM: 52.7
2261
Male, age 18, unknown
62.0
2087
Female, age 72, unknown
57.7
2668
Female, age 75, unknown
55.6
2664
Male, age 75, both hemispheres
53.9
1913
Female, age 42, unknown
53.3
1995
Male, age 72, unknown
52.1
1796
Male, age 53, unknown
51.8
2587
Male, age 74, left hemisphere
50.6
1839
Male, age 51, unknown
46.8
1895
Male, age 76, right hemisphere
43.2
Ventral tegmental area nTPM: 50.3
2410
Female, age 72, unknown
59.7
2223
Female, age 72, unknown
56.2
2218
Male, age 76, both hemispheres
47.3
2021
Male, age 53, unknown
47.2
1915
Female, age 42, unknown
45.8
1942
Male, age 51, unknown
45.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
39.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 39.1
Samples: 139
Max nTPM: 62.2
Min nTPM: 24.6
Std nTPM: 6.8
Median nTPM: 37.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
62.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
56.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
55.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
52.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
51.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
51.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
51.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
51.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
50.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
50.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
49.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
49.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
48.7
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
48.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
48.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
47.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
47.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
47.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
47.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
47.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
47.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
46.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
46.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
45.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
45.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
45.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
45.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
44.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
44.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
44.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
44.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
43.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
43.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
42.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
42.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
42.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
42.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
41.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
41.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
41.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
41.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
41.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
41.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
41.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
40.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
40.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
40.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
40.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
40.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
40.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
39.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
39.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
39.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
39.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
39.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
39.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
39.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
39.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
39.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
39.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
39.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
39.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
39.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
38.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
38.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
38.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
37.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
37.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
37.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
37.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
37.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
37.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
37.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
37.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
37.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
37.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
37.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
37.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
36.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
36.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
36.7
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
36.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
36.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
35.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
35.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
35.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
35.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
35.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
35.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
35.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
35.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
35.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
35.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
35.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
35.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
35.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
34.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
34.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
34.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
34.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
34.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
34.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
34.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
34.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
34.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
34.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
34.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
33.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
33.1
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
32.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
32.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
32.2
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
32.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
31.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
31.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
31.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
31.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
31.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
31.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
30.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
30.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
30.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
29.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
29.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
29.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
29.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
29.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
29.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
29.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
27.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
26.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
25.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
24.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
93.2
Mouse sample
Sample description
nTPM
Midbrain nTPM: 93.2
Samples: 4
Max nTPM: 95.9
Min nTPM: 88.2
Sample A
Male
88.2
Sample B
Male
95.9
Sample C
Female
94.6
Sample D
Female
94.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.