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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:304.3 nTPM
HPA:304.3 nTPM
GTEx:83.3 nTPM
FANTOM5:3722.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA049793Antibody CAB016070
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Medium
Goblet cells Not detected-
Paneth cells Not detected-



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 304.3
overview
Male, age 65
Small intestine sample 232
nTPM: 353.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 343.6
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 190.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 329.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 83.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 83.3
Samples: 187

Max nTPM: 580.4
Min nTPM: 0.0
Std nTPM: 120.0
Median nTPM: 20.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 580.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 562.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 494.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 487.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 435.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 423.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 373.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 359.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 341.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 335.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 334.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 308.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 302.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 283.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 269.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 250.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 247.8
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 245.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 245.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 242.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 238.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 237.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 231.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 223.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 222.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 220.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 220.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 215.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 214.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 210.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 204.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 202.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 200.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 192.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 184.9
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 184.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 177.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 166.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 165.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 163.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 159.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 157.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 141.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 140.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 137.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 134.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 122.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 118.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 113.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 113.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 113.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 112.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 110.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 104.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 100.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 99.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 98.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 95.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 91.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 89.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 87.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 84.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 83.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 77.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 74.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 72.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 71.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 70.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 69.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 66.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 59.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 59.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 56.4
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 54.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 54.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 53.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 53.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 52.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 51.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 51.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 49.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 43.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 40.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 40.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 39.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 35.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 31.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 31.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 30.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 28.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 27.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 25.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 23.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 20.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 20.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 19.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 18.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 17.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 16.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 15.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 15.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 12.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 9.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 9.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 9.1
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 9.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 8.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 6.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 5.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 5.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 4.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 4.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 4.2
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 4.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 3.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 3.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 0.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 0.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 0.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 0.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 0.7
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 0.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 0.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 0.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 0.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 0.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 0.5
GTEX-183FY-1626-SM-793D8 20-29 years, male 0.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 0.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 0.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 0.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 0.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 0.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 0.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 0.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 0.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.2
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 0.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 0.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 0.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 0.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.2
GTEX-1192X-2526-SM-59868 50-59 years, male 0.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 0.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 0.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 0.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 0.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 0.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 0.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 0.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 0.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 0.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 0.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 0.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 0.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3722.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3722.1
FF:10024-101D6 15,40,85 years, mixed 3722.1

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