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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
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Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:1.8 nTPM
GTEx:1.8 nTPM
FANTOM5:13.4 Scaled Tags Per Million
Pig:2.4 nTPM
Mouse:1.3 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 1.8
Samples: 105

Max nTPM: 3.8
Min nTPM: 0.4
Std nTPM: 0.6
Median nTPM: 0.0
89_1 63 years, male 3.8
254_1 77 years, female 3.8
286_1 68 years, female 3.8
314_1 67 years, male 3.6
495_1 57 years, female 3.3
491_1 89 years, female 3.2
42_1 85 years, male 3.1
295_1 61 years, female 2.9
466_1 57 years, female 2.9
375_1 74 years, female 2.8
413_1 59 years, female 2.8
501_1 88 years, male 2.8
119_1 70 years, female 2.7
318_1 68 years, male 2.7
414_1 84 years, female 2.7
173_1 67 years, male 2.6
307_1 66 years, female 2.4
348_1 84 years, male 2.3
499_1 55 years, female 2.3
394_1 75 years, female 2.2
109_1 81 years, female 2.1
229_1 69 years, female 2.1
350_1 84 years, female 2.1
384_1 83 years, male 2.1
452_1 88 years, female 2.1
35_1 74 years, female 2.0
117_1 61 years, male 2.0
145_1 84 years, male 2.0
149_1 88 years, male 2.0
308_1 70 years, female 2.0
317_1 60 years, male 2.0
503_1 68 years, male 2.0
43_1 64 years, female 1.9
120_1 70 years, female 1.9
142_1 61 years, female 1.9
264_1 73 years, female 1.9
389_1 86 years, female 1.9
425_1 59 years, female 1.9
9_1 66 years, female 1.8
41_1 94 years, female 1.8
172_1 72 years, female 1.8
218_1 71 years, female 1.8
311_1 78 years, male 1.8
347_1 72 years, male 1.8
415_1 77 years, female 1.8
139_1 64 years, female 1.7
265_1 87 years, male 1.7
322_1 76 years, male 1.7
324_1 76 years, male 1.7
405_1 91 years, male 1.7
526_1 61 years, male 1.7
4_1 88 years, female 1.6
17_1 71 years, male 1.6
81_1 67 years, male 1.6
163_1 78 years, male 1.6
177_1 74 years, male 1.6
291_1 76 years, male 1.6
315_1 62 years, female 1.6
354_1 81 years, female 1.6
355_1 70 years, female 1.6
447_1 81 years, male 1.6
480_1 63 years, male 1.6
162_1 79 years, female 1.5
189_1 76 years, male 1.5
288_1 66 years, female 1.5
349_1 83 years, male 1.5
353_1 82 years, female 1.5
377_1 82 years, female 1.5
490_1 67 years, female 1.5
518_1 75 years, female 1.5
126_1 63 years, male 1.4
320_1 89 years, female 1.4
376_1 75 years, female 1.4
99_1 64 years, male 1.3
251_1 78 years, male 1.3
319_1 81 years, male 1.3
335_1 73 years, female 1.3
352_1 62 years, male 1.3
379_1 60 years, male 1.3
386_1 76 years, male 1.3
396_1 62 years, male 1.3
517_1 88 years, male 1.3
6_1 73 years, female 1.2
32_1 67 years, male 1.2
243_1 75 years, male 1.2
293_1 68 years, female 1.2
313_1 79 years, female 1.2
351_1 91 years, male 1.2
404_1 82 years, female 1.2
2_1 77 years, female 1.1
217_1 76 years, male 1.1
356_1 87 years, female 1.1
18_1 88 years, male 1.0
115_1 83 years, male 1.0
292_1 71 years, male 1.0
406_1 79 years, male 1.0
468_1 89 years, male 1.0
506_1 65 years, male 1.0
137_1 83 years, male 0.9
316_1 62 years, male 0.9
321_1 62 years, female 0.9
237_1 82 years, male 0.8
153_1 70 years, female 0.7
266_1 85 years, male 0.5
246_1 77 years, male 0.4
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 13.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 13.4
FF:10030-101E3 24-65 years, mixed 13.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2.4
Pig sample Sample description nTPM
Retina
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.0
Sample A Female 2.7
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 2.4

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 1.3
Mouse sample Sample description nTPM
Retina
nTPM: 1.3
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.6
Sample A Male 2.0
Sample B Male 0.6
Sample C Female 1.1
Sample D Female 1.4

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