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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:7.2 nTPM
HPA:7.2 nTPM
GTEx:6.5 nTPM
FANTOM5:10.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max nTPM 7.2
Sample id Sample description nTPM
Amygdala
nTPM: 7.2
2514 Male, age 75, right hemisphere 10.3
1987 Female, age 91, left hemisphere 7.7
2814 Male, age 76, right hemisphere 6.4
2695 Female, age 67, right hemisphere 6.3
2517 Female, age 94, left hemisphere 5.4
Basal amygdala
nTPM: 6.2
1955 Male, age 76, both hemispheres 6.5
2685 Female, age 94, left hemisphere 6.5
2243 Female, age 91, right hemisphere 6.4
2609 Male, age 75, right hemisphere 6.4
2827 Female, age 67, right hemisphere 5.9
2110 Male, age 80, left hemisphere 5.8
Central amygdala
nTPM: 6.4
2701 Female, age 91, right hemisphere 8.2
1905 Male, age 76, both hemispheres 6.4
2239 Male, age 80, left hemisphere 6.1
2515 Male, age 75, right hemisphere 5.7
2826 Female, age 94, left hemisphere 5.6
Corticomedial amygdala
nTPM: 6.8
2242 Female, age 91, right hemisphere 7.4
2535 Female, age 67, right hemisphere 7.3
2240 Male, age 76, both hemispheres 6.8
2428 Male, age 75, right hemisphere 6.7
2429 Female, age 94, left hemisphere 6.4
2829 Male, age 80, left hemisphere 6.0
Lateral amygdala
nTPM: 6.0
2256 Male, age 80, left hemisphere 7.3
2255 Female, age 91, right hemisphere 6.8
1883 Male, age 76, both hemispheres 6.3
2534 Female, age 94, left hemisphere 5.9
2516 Male, age 75, right hemisphere 5.4
2830 Female, age 67, right hemisphere 4.6
Stria terminalis, bed nucleus
nTPM: 6.1
2201 Male, age 74, unknown 6.2
2486 Female, age 94, both hemispheres 6.1
1974 Female, age 91, both hemispheres 5.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 6.5
Samples: 152

Max nTPM: 16.8
Min nTPM: 1.3
Std nTPM: 3.4
Median nTPM: 5.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 16.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 16.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 15.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 15.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 14.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 14.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 13.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 13.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 13.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 13.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 13.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 12.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 12.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 12.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 11.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 11.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 11.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 11.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 10.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 10.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 10.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 10.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 10.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 10.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 10.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 10.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 9.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 9.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 9.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 9.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 9.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 9.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 8.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 8.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 8.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 8.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 8.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 8.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 8.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 8.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 8.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 8.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 7.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 7.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 7.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 7.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 7.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 7.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 7.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 7.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 7.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 7.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 7.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 7.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 7.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 7.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 7.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 7.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 7.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 6.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 6.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 6.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 6.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 6.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 6.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 6.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 6.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 6.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 6.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 6.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 6.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 6.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 5.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 5.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 5.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 5.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 5.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 5.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 5.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 5.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 5.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 5.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 5.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 5.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 5.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 5.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 5.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 5.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 4.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 4.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 4.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 4.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 4.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 4.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 4.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 4.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 4.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 4.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 4.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 4.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 4.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 4.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 4.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 4.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 4.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 4.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 4.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 4.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 4.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 3.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 3.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 3.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 3.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 3.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 3.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 3.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 3.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 3.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 3.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 3.3
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 3.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 3.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 3.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 2.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 2.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 2.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 2.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 2.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 2.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 2.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 2.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 10.2
FF:10151-102I7 76 years, female 10.2

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