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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:14.1 nTPM
HPA:14.1 nTPM
GTEx:6.3 nTPM
FANTOM5:54.9 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:14.0 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 14.1
Sample id Sample description nTPM
Amygdala
nTPM: 12.4
2695 Female, age 67, right hemisphere 19.3
2517 Female, age 94, left hemisphere 12.7
2814 Male, age 76, right hemisphere 11.7
2514 Male, age 75, right hemisphere 10.7
1987 Female, age 91, left hemisphere 7.6
Basal amygdala
nTPM: 12.0
2827 Female, age 67, right hemisphere 15.9
2685 Female, age 94, left hemisphere 13.5
1955 Male, age 76, both hemispheres 12.7
2609 Male, age 75, right hemisphere 11.7
2110 Male, age 80, left hemisphere 10.0
2243 Female, age 91, right hemisphere 8.2
Central amygdala
nTPM: 11.9
2826 Female, age 94, left hemisphere 17.7
2515 Male, age 75, right hemisphere 13.1
1905 Male, age 76, both hemispheres 11.5
2239 Male, age 80, left hemisphere 9.5
2701 Female, age 91, right hemisphere 7.7
Corticomedial amygdala
nTPM: 11.2
2428 Male, age 75, right hemisphere 13.8
2240 Male, age 76, both hemispheres 13.2
2535 Female, age 67, right hemisphere 12.2
2429 Female, age 94, left hemisphere 10.0
2829 Male, age 80, left hemisphere 9.4
2242 Female, age 91, right hemisphere 8.4
Lateral amygdala
nTPM: 14.1
2830 Female, age 67, right hemisphere 26.2
2516 Male, age 75, right hemisphere 14.9
2534 Female, age 94, left hemisphere 14.5
1883 Male, age 76, both hemispheres 11.9
2256 Male, age 80, left hemisphere 8.7
2255 Female, age 91, right hemisphere 8.5
Stria terminalis, bed nucleus
nTPM: 7.3
2201 Male, age 74, unknown 8.1
2486 Female, age 94, both hemispheres 7.2
1974 Female, age 91, both hemispheres 6.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 6.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 6.3
Samples: 152

Max nTPM: 26.2
Min nTPM: 0.5
Std nTPM: 4.6
Median nTPM: 5.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 26.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 24.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 24.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 22.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 21.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 15.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 15.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 14.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 14.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 13.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 12.9
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 12.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 12.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 12.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 12.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 11.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 11.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 11.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 10.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 10.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 10.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 9.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 9.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 9.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 9.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 9.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 9.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 9.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 9.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 8.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 8.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 8.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 8.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 8.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 8.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 8.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 8.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 8.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 8.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 8.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 7.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 7.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 7.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 7.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 7.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 7.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 6.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 6.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 6.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 6.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 6.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 6.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 6.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 6.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 6.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 6.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 6.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 6.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 6.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 6.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 6.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 5.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 5.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 5.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 5.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 5.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 5.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 5.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 5.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 5.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 5.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 5.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 5.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 5.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 5.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 5.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 5.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 4.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 4.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 4.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 4.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 4.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 4.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 4.4
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 4.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 4.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 4.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 4.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 4.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 4.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 4.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 4.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 4.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 3.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 3.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 3.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 3.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 3.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 3.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 3.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 3.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 3.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 3.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 3.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 3.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 3.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 3.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 3.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 3.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 3.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 3.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 3.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 3.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 3.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 2.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 2.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 2.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 2.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 2.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 2.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 2.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 2.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 0.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 0.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 0.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 0.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 0.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 54.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 54.9
FF:10151-102I7 76 years, female 54.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 3.1
Pig sample Sample description nTPM
Amygdala
nTPM: 6.2
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.0
Sample A Female 5.4
Sample B Female 7.5
Sample C Male 6.9
Sample D Male 5.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Male 0.9
Sample B Male 0.9
Sample C Female 1.0
Sample D Female 1.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
78534536 Antisense, RP_070620_02_C04, Mouse strain C57BL/6J (56 days, male) 0.3
70724511 Antisense, RP_050705_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0
Cortical subplate
Expression energy: 0.3
78534536 Antisense, RP_070620_02_C04, Mouse strain C57BL/6J (56 days, male) 0.3
70724511 Antisense, RP_050705_02_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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