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MISP
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Low
Enterocytes: Low
Enterocytes - Microvilli: High
Goblet cells: Low
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:196.6 nTPM
HPA:196.6 nTPM
GTEx:116.7 nTPM
FANTOM5:134.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA049511Antibody HPA062232
Endocrine cells Low-
Enterocytes Low-
Enterocytes - Microvilli High-
Glandular cells -High
Goblet cells Low-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 196.6
overview
Male, age 65
Small intestine sample 232
nTPM: 219.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 267.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 148.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 150.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 116.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 116.7
Samples: 187

Max nTPM: 577.1
Min nTPM: 0.0
Std nTPM: 126.4
Median nTPM: 67.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 577.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 413.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 403.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 401.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 396.7
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 385.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 382.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 373.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 367.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 367.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 363.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 357.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 357.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 353.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 338.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 335.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 333.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 319.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 319.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 311.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 308.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 307.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 307.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 303.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 303.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 297.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 285.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 278.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 269.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 266.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 265.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 261.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 253.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 238.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 238.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 232.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 229.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 228.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 228.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 226.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 226.2
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 225.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 221.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 216.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 208.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 205.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 200.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 199.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 198.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 196.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 190.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 187.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 187.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 185.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 183.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 181.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 174.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 174.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 168.5
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 165.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 149.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 148.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 146.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 144.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 143.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 141.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 139.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 138.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 138.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 134.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 134.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 128.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 127.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 126.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 113.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 112.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 108.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 107.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 104.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 103.9
GTEX-1C475-1426-SM-793CH 40-49 years, female 101.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 98.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 96.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 94.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 94.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 85.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 82.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 82.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 80.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 77.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 77.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 74.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 72.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 67.7
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 65.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 60.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 58.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 58.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 58.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 58.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 51.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 51.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 42.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 39.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 36.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 34.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 33.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 32.7
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 32.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 26.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 26.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 25.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 25.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 24.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 23.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 23.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 22.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 21.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 18.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 16.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 15.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 15.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 14.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 13.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 13.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 12.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 12.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 12.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 11.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 11.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 10.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 10.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 10.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 10.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 9.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 9.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 9.4
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 9.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 9.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 9.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 8.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 7.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 6.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 6.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 5.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 5.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 5.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 5.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 4.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 4.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 4.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 4.0
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 4.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 3.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 3.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 3.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 3.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 2.4
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.0
GTEX-1192X-2526-SM-59868 50-59 years, male 1.9
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 0.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 0.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 134.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 134.7
FF:10024-101D6 15,40,85 years, mixed 134.7

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