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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:27.1 nTPM
HPA Brain:30.6 nTPM
GTEx:27.1 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:12.0 nTPM
Mouse:9.3 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006366
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Hippocampus
nTPM: 28.8
2529 Female, age 94, left hemisphere 32.7
1911 Female, age 85, right hemisphere 30.3
2621 Female, age 67, right hemisphere 29.8
1898 Male, age 80, left hemisphere 27.7
2148 Female, age 91, left hemisphere 27.1
1855 Male, age 76, left hemisphere 25.3
Dentate gyrus
nTPM: 29.2
2530 Female, age 94, left hemisphere 33.0
2531 Female, age 67, both hemispheres 32.9
2528 Male, age 74, both hemispheres 29.5
1927 Female, age 91, both hemispheres 27.1
2010 Male, age 76, both hemispheres 27.1
2246 Female, age 85, both hemispheres 25.8
Entorhinal gyrus
nTPM: 30.6
2613 Female, age 94, left hemisphere 35.4
2764 Male, age 80, right hemisphere 34.6
2117 Female, age 91, right hemisphere 32.6
1938 Female, age 85, left hemisphere 28.2
1787 Male, age 76, left hemisphere 27.6
2686 Male, age 75, right hemisphere 24.9
Hippocampus, CA1
nTPM: 28.0
2749 Male, age 80, left hemisphere 37.1
2527 Male, age 74, both hemispheres 30.5
2082 Female, age 91, right hemisphere 26.8
1873 Female, age 85, both hemispheres 26.3
2045 Male, age 76, both hemispheres 19.2
Hippocampus, CA2
nTPM: 29.1
1963 Male, age 80, left hemisphere 35.2
2437 Female, age 94, left hemisphere 31.6
2249 Male, age 74, both hemispheres 28.7
2113 Female, age 91, right hemisphere 28.3
1940 Female, age 85, left hemisphere 26.3
1892 Male, age 76, both hemispheres 24.4
Hippocampus, CA3
nTPM: 29.9
2620 Female, age 94, left hemisphere 36.3
2137 Male, age 80, left hemisphere 33.3
2861 Female, age 67, both hemispheres 31.6
2436 Male, age 74, both hemispheres 27.8
1891 Female, age 85, both hemispheres 25.8
1867 Male, age 76, both hemispheres 24.5
Parahippocampal cortex
nTPM: 26.8
1990 Female, age 91, right hemisphere 30.7
2245 Female, age 91, both hemispheres 29.1
2532 Female, age 72, left hemisphere 27.8
2622 Female, age 67, right hemisphere 27.6
2250 Female, age 67, right hemisphere 27.4
1933 Female, age 85, both hemispheres 27.0
2018 Male, age 76, both hemispheres 24.9
2692 Male, age 74, both hemispheres 24.9
1850 Male, age 80, both hemispheres 24.3
2693 Female, age 94, both hemispheres 23.7
Perirhinal gyrus
nTPM: 25.2
1794 Male, age 80, right hemisphere 28.5
2521 Female, age 94, right hemisphere 28.2
1847 Female, age 91, left hemisphere 25.2
1841 Female, age 85, right hemisphere 23.8
2848 Male, age 76, right hemisphere 20.2
Subiculum
nTPM: 27.1
1977 Female, age 85, both hemispheres 32.1
2042 Male, age 76, both hemispheres 29.1
1901 Male, age 80, both hemispheres 29.0
2619 Male, age 74, both hemispheres 26.7
2729 Female, age 91, right hemisphere 24.7
2438 Female, age 94, left hemisphere 21.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 27.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 27.1
Samples: 197

Max nTPM: 55.8
Min nTPM: 12.8
Std nTPM: 7.3
Median nTPM: 26.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 55.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 50.4
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 48.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 45.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 45.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 44.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 43.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 43.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 42.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 41.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 39.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 39.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 39.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 38.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 38.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 38.2
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 37.4
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 37.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 36.3
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 35.7
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 35.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 35.2
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 35.2
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 35.0
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 34.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 34.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 33.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 33.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 33.7
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 33.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 33.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 33.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 33.2
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 33.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 32.8
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 32.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 32.4
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 32.4
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 32.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 32.3
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 32.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 32.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 32.2
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 31.6
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 31.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 31.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 31.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 31.2
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 31.1
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 30.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 30.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 30.6
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 30.6
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 30.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 30.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 30.4
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 30.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 30.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 30.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 30.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 30.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 30.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 30.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 30.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 29.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 29.7
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 29.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 29.3
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 29.3
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 29.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 29.3
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 29.1
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 28.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 28.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 28.8
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 28.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 28.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 28.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 28.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 28.3
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 28.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 28.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 27.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 27.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 27.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 27.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 27.3
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 27.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 27.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 27.3
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 27.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 27.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 27.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 27.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 26.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 26.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 26.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 26.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 26.5
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 26.4
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 26.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 26.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 26.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 26.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 25.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 25.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 25.7
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 25.6
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 25.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 25.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 25.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 25.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 25.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 25.1
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 25.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 25.1
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 25.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 24.9
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 24.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 24.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 24.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 24.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 24.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 24.4
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 24.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 24.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 24.1
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 24.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 24.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 24.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 24.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 23.8
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 23.7
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 23.5
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 23.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 23.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 23.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 22.9
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 22.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 22.5
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 22.3
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 22.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 22.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 22.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 21.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 21.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 21.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 21.6
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 21.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 21.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 21.5
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 21.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 21.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 21.4
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 21.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 21.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 21.1
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 21.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 20.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 20.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 20.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 20.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 20.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 20.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 20.2
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 20.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 20.0
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 20.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 19.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 19.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 19.5
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 19.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 19.2
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 18.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 18.7
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 18.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 18.6
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 18.3
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 18.2
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 18.2
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 18.2
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 18.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 17.4
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 17.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 17.2
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 16.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 15.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 15.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 15.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 14.8
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 14.6
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 14.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 14.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 14.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 14.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 12.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.5
FF:10153-102I9 76 years, female 10.6
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 12.0
Pig sample Sample description nTPM
Subiculum
nTPM: 10.8
Samples: 4

Max nTPM: 13.7
Min nTPM: 8.9
Sample A Female 13.7
Sample B Female 9.3
Sample C Male 11.1
Sample D Male 8.9
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 13.6
Min nTPM: 8.7
Sample A Female 13.6
Sample B Female 11.3
Sample C Male 11.6
Sample D Male 8.7
Entorhinal cortex
nTPM: 10.8
Samples: 4

Max nTPM: 11.6
Min nTPM: 9.7
Sample A Female 11.6
Sample B Female 10.6
Sample C Male 11.3
Sample D Male 9.7
Ventral hippocampus
nTPM: 12.1
Samples: 4

Max nTPM: 15.7
Min nTPM: 8.8
Sample A Female 11.9
Sample B Female 8.8
Sample C Male 15.7
Sample D Male 11.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 9.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.7
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.7
Sample A Male 9.0
Sample B Male 8.3
Sample C Female 7.7
Sample D Female 9.9
Hippocampal formation
nTPM: 9.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.1
Sample A Male 8.1
Sample B Male 9.0
Sample C Female 9.0
Sample D Female 11.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
69816697 Antisense, RP_050510_01_F08, Mouse strain C57BL/6J (56 days, male) 0.6

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