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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:21.7 nTPM
HPA:21.7 nTPM
GTEx:28.1 nTPM
FANTOM5:9.5 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:9.3 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006366
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 21.7
Sample id Sample description nTPM
Hippocampus
nTPM: 20.6
2529 Female, age 94, left hemisphere 22.8
1911 Female, age 85, right hemisphere 21.3
2621 Female, age 67, right hemisphere 21.3
1898 Male, age 80, left hemisphere 20.0
2148 Female, age 91, left hemisphere 19.9
2860 Male, age 74, right hemisphere 19.7
1855 Male, age 76, left hemisphere 18.9
Dentate gyrus
nTPM: 21.0
2530 Female, age 94, left hemisphere 23.0
2531 Female, age 67, both hemispheres 23.0
2528 Male, age 74, both hemispheres 21.1
1927 Female, age 91, both hemispheres 19.9
2010 Male, age 76, both hemispheres 19.6
2246 Female, age 85, both hemispheres 19.3
Entorhinal gyrus
nTPM: 21.7
2613 Female, age 94, left hemisphere 24.6
2764 Male, age 80, right hemisphere 23.8
2117 Female, age 91, right hemisphere 22.4
1938 Female, age 85, left hemisphere 20.4
1787 Male, age 76, left hemisphere 20.2
2686 Male, age 75, right hemisphere 19.1
Hippocampus, CA1
nTPM: 20.6
2749 Male, age 80, left hemisphere 24.3
2343 Female, age 94, left hemisphere 22.7
2527 Male, age 74, both hemispheres 21.6
2082 Female, age 91, right hemisphere 19.7
1873 Female, age 85, both hemispheres 19.4
2045 Male, age 76, both hemispheres 16.1
Hippocampus, CA2
nTPM: 21.0
1963 Male, age 80, left hemisphere 23.6
2437 Female, age 94, left hemisphere 22.5
2342 Male, age 74, both hemispheres 21.7
2113 Female, age 91, right hemisphere 20.4
1940 Female, age 85, left hemisphere 19.2
1892 Male, age 76, both hemispheres 18.5
Hippocampus, CA3
nTPM: 21.3
2620 Female, age 94, left hemisphere 25.0
2137 Male, age 80, left hemisphere 23.0
2861 Female, age 67, both hemispheres 22.3
2436 Male, age 74, both hemispheres 19.8
1891 Female, age 85, both hemispheres 19.2
1867 Male, age 76, both hemispheres 18.4
Parahippocampal cortex
nTPM: 19.7
1990 Female, age 91, right hemisphere 21.6
2245 Female, age 91, both hemispheres 20.7
2622 Female, age 67, right hemisphere 20.6
2532 Female, age 72, left hemisphere 20.3
1933 Female, age 85, both hemispheres 19.8
2718 Female, age 67, right hemisphere 19.2
2692 Male, age 74, both hemispheres 19.1
2018 Male, age 76, both hemispheres 18.7
2693 Female, age 94, both hemispheres 18.7
1850 Male, age 80, both hemispheres 18.6
Perirhinal gyrus
nTPM: 19.3
2521 Female, age 94, right hemisphere 20.9
1794 Male, age 80, right hemisphere 20.7
2519 Male, age 75, right hemisphere 20.4
1847 Female, age 91, left hemisphere 18.9
1841 Female, age 85, right hemisphere 18.4
2848 Male, age 76, right hemisphere 16.8
Subiculum
nTPM: 19.6
1977 Female, age 85, both hemispheres 22.1
1901 Male, age 80, both hemispheres 20.8
2042 Male, age 76, both hemispheres 20.4
2619 Male, age 74, both hemispheres 19.8
2729 Female, age 91, right hemisphere 18.7
2702 Female, age 67, right hemisphere 17.9
2438 Female, age 94, left hemisphere 17.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 28.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 28.1
Samples: 197

Max nTPM: 57.8
Min nTPM: 13.3
Std nTPM: 7.5
Median nTPM: 27.6
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.8
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 52.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 50.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 47.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 46.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 45.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 45.2
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 44.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 43.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 42.5
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 41.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 9.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 9.5
FF:10153-102I9 76 years, female 10.7
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.4
Sample A Female 10.2
Sample B Female 8.4
Sample C Male 8.7
Sample D Male 6.4
Entorhinal cortex
nTPM: 8.1
Samples: 4

Max nTPM: 8.7
Min nTPM: 7.2
Sample A Female 8.7
Sample B Female 8.0
Sample C Male 8.5
Sample D Male 7.2
Subiculum
nTPM: 7.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 6.5
Sample A Female 10.2
Sample B Female 6.8
Sample C Male 8.2
Sample D Male 6.5
Ventral hippocampus
nTPM: 9.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 6.5
Sample A Female 8.9
Sample B Female 6.5
Sample C Male 11.8
Sample D Male 8.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 9.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.7
Samples: 4

Max nTPM: 9.9
Min nTPM: 7.7
Sample A Male 9.0
Sample B Male 8.3
Sample C Female 7.7
Sample D Female 9.9
Hippocampal formation
nTPM: 9.3
Samples: 4

Max nTPM: 11.1
Min nTPM: 8.1
Sample A Male 8.1
Sample B Male 9.0
Sample C Female 9.0
Sample D Female 11.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
69816697 Antisense, RP_050510_01_F08, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

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