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TISSUE PRIMARY DATA HIPPOCAMPAL FORMATION Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:11.7 nTPM
HPA Brain:22.0 nTPM
GTEx:11.7 nTPM
FANTOM5:6.1 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:5.6 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003747Antibody HPA019769
Glial cells Not detectedNot detected
Neuronal cells MediumNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Hippocampus
nTPM: 20.8
2529 Female, age 94, left hemisphere 26.4
1911 Female, age 85, right hemisphere 20.7
1855 Male, age 76, left hemisphere 19.8
2621 Female, age 67, right hemisphere 19.8
2148 Female, age 91, left hemisphere 19.6
1898 Male, age 80, left hemisphere 18.4
Dentate gyrus
nTPM: 20.7
2530 Female, age 94, left hemisphere 26.9
2528 Male, age 74, both hemispheres 23.1
2010 Male, age 76, both hemispheres 20.5
2246 Female, age 85, both hemispheres 19.5
2531 Female, age 67, both hemispheres 19.4
1927 Female, age 91, both hemispheres 14.5
Entorhinal gyrus
nTPM: 18.8
2117 Female, age 91, right hemisphere 23.5
2686 Male, age 75, right hemisphere 21.6
2764 Male, age 80, right hemisphere 18.4
1787 Male, age 76, left hemisphere 17.1
2613 Female, age 94, left hemisphere 16.5
1938 Female, age 85, left hemisphere 15.8
Hippocampus, CA1
nTPM: 17.2
2527 Male, age 74, both hemispheres 20.9
2082 Female, age 91, right hemisphere 20.5
1873 Female, age 85, both hemispheres 15.8
2045 Male, age 76, both hemispheres 15.5
2749 Male, age 80, left hemisphere 13.2
Hippocampus, CA2
nTPM: 19.8
2437 Female, age 94, left hemisphere 23.8
2113 Female, age 91, right hemisphere 22.2
1940 Female, age 85, left hemisphere 20.9
2249 Male, age 74, both hemispheres 20.6
1963 Male, age 80, left hemisphere 18.5
1892 Male, age 76, both hemispheres 13.0
Hippocampus, CA3
nTPM: 19.7
2436 Male, age 74, both hemispheres 24.8
2861 Female, age 67, both hemispheres 24.1
1891 Female, age 85, both hemispheres 19.1
1867 Male, age 76, both hemispheres 18.1
2620 Female, age 94, left hemisphere 17.5
2137 Male, age 80, left hemisphere 14.6
Parahippocampal cortex
nTPM: 18.0
2692 Male, age 74, both hemispheres 22.4
2018 Male, age 76, both hemispheres 20.4
2245 Female, age 91, both hemispheres 19.6
2622 Female, age 67, right hemisphere 19.5
2532 Female, age 72, left hemisphere 18.2
1990 Female, age 91, right hemisphere 17.5
2250 Female, age 67, right hemisphere 16.6
2693 Female, age 94, both hemispheres 15.9
1933 Female, age 85, both hemispheres 15.4
1850 Male, age 80, both hemispheres 14.7
Perirhinal gyrus
nTPM: 14.0
2521 Female, age 94, right hemisphere 16.0
1794 Male, age 80, right hemisphere 14.9
2848 Male, age 76, right hemisphere 13.5
1847 Female, age 91, left hemisphere 13.1
1841 Female, age 85, right hemisphere 12.6
Subiculum
nTPM: 22.0
2438 Female, age 94, left hemisphere 24.1
2042 Male, age 76, both hemispheres 24.0
2619 Male, age 74, both hemispheres 24.0
2729 Female, age 91, right hemisphere 23.5
1901 Male, age 80, both hemispheres 19.7
1977 Female, age 85, both hemispheres 16.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 11.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.7
Samples: 197

Max nTPM: 23.1
Min nTPM: 4.5
Std nTPM: 3.6
Median nTPM: 11.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 23.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 22.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 21.5
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 20.5
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 20.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 19.9
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 19.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 19.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 19.2
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 19.1
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 18.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 18.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 18.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 18.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 17.8
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 17.4
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 17.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 17.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 16.7
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 16.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 16.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 16.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 16.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 16.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 16.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 16.0
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 15.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 15.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 15.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 15.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 15.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 15.1
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 15.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 15.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 15.0
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 15.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 14.9
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 14.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 14.7
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 14.6
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 14.6
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 14.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 14.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 14.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 14.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 14.2
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 14.2
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 14.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 14.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 13.9
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 13.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 13.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 13.8
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 13.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 13.6
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 13.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 13.4
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 13.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 13.4
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 13.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 13.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 13.3
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 13.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 13.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 13.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 13.1
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 13.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 12.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 12.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 12.7
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 12.6
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 12.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 12.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 12.5
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 12.5
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 12.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 12.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 12.4
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 12.3
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 12.3
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 12.3
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 12.2
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 12.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 12.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 12.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 11.9
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 11.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 11.9
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 11.8
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 11.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 11.8
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 11.7
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 11.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 11.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 11.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 11.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 11.5
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 11.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 11.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 11.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 11.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 11.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 11.1
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 11.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 11.0
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 10.9
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 10.9
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 10.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 10.8
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 10.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 10.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 10.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 10.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 10.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 10.4
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 10.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 10.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 10.2
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 10.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 10.2
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 10.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 10.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 10.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 10.0
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 9.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 9.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 9.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 9.8
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 9.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 9.8
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 9.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 9.7
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 9.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 9.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 9.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 9.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 9.5
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 9.4
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 9.3
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 9.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 9.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 9.2
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 9.2
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 9.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 9.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 9.2
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 9.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 9.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 8.8
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 8.7
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 8.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 8.6
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 8.5
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 8.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 8.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 8.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 8.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 8.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 8.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 8.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 8.1
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 8.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 8.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 8.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 8.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 8.0
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 8.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 7.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 7.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 7.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 7.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 7.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 7.6
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 7.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 7.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 7.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 7.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 7.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 7.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 7.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 7.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 7.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 6.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 6.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 6.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 6.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 6.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 6.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 6.4
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 6.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 6.1
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 6.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 5.5
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 5.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 4.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 6.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 6.1
FF:10153-102I9 76 years, female 9.1
FF:10169-103B7 60 years, female 3.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 15.9
Pig sample Sample description nTPM
Subiculum
nTPM: 13.4
Samples: 4

Max nTPM: 17.2
Min nTPM: 9.6
Sample A Female 9.6
Sample B Female 13.8
Sample C Male 13.0
Sample D Male 17.2
Dorsal hippocampus
nTPM: 11.7
Samples: 4

Max nTPM: 16.5
Min nTPM: 8.0
Sample A Female 8.0
Sample B Female 11.6
Sample C Male 10.6
Sample D Male 16.5
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 14.4
Sample A Female 16.0
Sample B Female 14.6
Sample C Male 14.4
Sample D Male 18.3
Ventral hippocampus
nTPM: 13.1
Samples: 4

Max nTPM: 16.7
Min nTPM: 11.0
Sample A Female 13.3
Sample B Female 16.7
Sample C Male 11.5
Sample D Male 11.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 5.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.9
Sample A Male 6.4
Sample B Male 4.9
Sample C Female 5.0
Sample D Female 6.1
Hippocampal formation
nTPM: 3.9
Samples: 4

Max nTPM: 4.1
Min nTPM: 3.5
Sample A Male 3.9
Sample B Male 3.9
Sample C Female 3.5
Sample D Female 4.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
69262263 Antisense, RP_050303_01_D06, Mouse strain C57BL/6J (56 days, male) 0.4

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