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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
252.5
nTPM
HPA Brain:
3675.9
nTPM
GTEx:
252.5
nTPM
FANTOM5:
3277.3
Scaled Tags Per Million
Pig:
72.0
nTPM
Mouse:
4894.4
nTPM
Allen mouse:
0.9
Expression energy
HIPPOCAMPUS - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA002550
Glial cells
Not detected
Neuronal cells
Not detected
Neuronal projections
Not detected
Synapses
Not detected
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA002550
Antibody CAB002517
Antibody CAB062567
Antibody CAB073406
Glial cells
Not detected
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
3675.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 146.3
2621
Female, age 67, right hemisphere
580.3
2148
Female, age 91, left hemisphere
116.0
2529
Female, age 94, left hemisphere
74.5
1911
Female, age 85, right hemisphere
47.0
1855
Male, age 76, left hemisphere
31.1
1898
Male, age 80, left hemisphere
29.2
Dentate gyrus nTPM: 323.7
2531
Female, age 67, both hemispheres
1322.6
2010
Male, age 76, both hemispheres
311.5
1927
Female, age 91, both hemispheres
140.1
2246
Female, age 85, both hemispheres
89.8
2530
Female, age 94, left hemisphere
46.7
2528
Male, age 74, both hemispheres
31.2
Entorhinal gyrus nTPM: 46.3
1787
Male, age 76, left hemisphere
59.0
2686
Male, age 75, right hemisphere
58.3
2764
Male, age 80, right hemisphere
47.4
2117
Female, age 91, right hemisphere
46.3
1938
Female, age 85, left hemisphere
36.1
2613
Female, age 94, left hemisphere
31.0
Hippocampus, CA1 nTPM: 119.1
2527
Male, age 74, both hemispheres
295.5
1873
Female, age 85, both hemispheres
175.6
2749
Male, age 80, left hemisphere
51.5
2082
Female, age 91, right hemisphere
41.6
2045
Male, age 76, both hemispheres
31.2
Hippocampus, CA2 nTPM: 959.2
2249
Male, age 74, both hemispheres
5433.8
2437
Female, age 94, left hemisphere
115.7
1892
Male, age 76, both hemispheres
104.5
2113
Female, age 91, right hemisphere
37.1
1963
Male, age 80, left hemisphere
32.4
1940
Female, age 85, left hemisphere
31.7
Hippocampus, CA3 nTPM: 3675.9
2436
Male, age 74, both hemispheres
21119.2
2861
Female, age 67, both hemispheres
780.0
1867
Male, age 76, both hemispheres
54.1
2137
Male, age 80, left hemisphere
41.2
1891
Female, age 85, both hemispheres
32.8
2620
Female, age 94, left hemisphere
28.1
Parahippocampal cortex nTPM: 48.0
2250
Female, age 67, right hemisphere
113.6
2693
Female, age 94, both hemispheres
58.2
1990
Female, age 91, right hemisphere
48.0
1933
Female, age 85, both hemispheres
47.9
1850
Male, age 80, both hemispheres
42.2
2532
Female, age 72, left hemisphere
42.1
2245
Female, age 91, both hemispheres
35.4
2622
Female, age 67, right hemisphere
35.1
2018
Male, age 76, both hemispheres
29.5
2692
Male, age 74, both hemispheres
28.5
Perirhinal gyrus nTPM: 43.0
2848
Male, age 76, right hemisphere
59.1
2521
Female, age 94, right hemisphere
56.0
1794
Male, age 80, right hemisphere
39.8
1841
Female, age 85, right hemisphere
33.8
1847
Female, age 91, left hemisphere
26.3
Subiculum nTPM: 107.4
2438
Female, age 94, left hemisphere
461.2
2729
Female, age 91, right hemisphere
60.8
1977
Female, age 85, both hemispheres
41.6
1901
Male, age 80, both hemispheres
32.4
2042
Male, age 76, both hemispheres
26.4
2619
Male, age 74, both hemispheres
22.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
252.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 252.5
Samples: 197
Max nTPM: 6182.6
Min nTPM: 0.1
Std nTPM: 739.6
Median nTPM: 65.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
6182.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5775.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4776.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
2414.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1833.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
1825.4
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1603.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
1110.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
1073.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
997.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
967.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
943.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
875.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
566.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
523.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
516.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
479.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
459.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
445.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
443.1
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
441.3
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
404.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
388.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
385.5
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
360.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
354.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
347.6
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
343.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
334.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
334.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
317.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
307.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
300.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
264.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
260.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
258.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
236.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
223.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
223.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
221.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
220.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
217.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
214.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
201.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
200.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
197.7
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
183.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
179.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
178.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
176.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
172.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
172.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
169.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
162.0
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
160.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
159.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
154.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
150.9
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
149.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
143.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
142.8
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
140.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
137.8
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
137.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
135.2
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
130.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
127.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
118.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
118.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
103.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
103.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
102.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
102.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
97.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
95.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
95.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
94.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
93.6
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
93.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
88.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
87.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
85.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
82.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
81.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
80.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
80.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
78.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
77.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
77.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
76.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
75.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
71.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
71.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
70.7
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
70.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
70.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
66.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
65.6
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
65.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
62.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
60.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
60.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
59.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
59.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
57.4
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
56.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
53.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
52.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
52.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
51.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
50.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
50.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
46.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
43.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
43.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
41.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
40.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
40.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
39.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
39.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
39.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
38.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
36.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
36.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
36.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
36.3
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
35.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
35.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
35.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
34.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
34.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
33.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
32.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
32.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
29.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
28.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
27.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
26.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
23.4
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
23.1
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
23.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
22.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
21.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
20.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
20.2
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
20.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
19.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
19.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
19.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
19.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
18.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
18.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
18.4
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
18.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
17.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
17.4
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
17.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
16.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
16.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
14.9
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
14.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
14.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
13.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
12.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
12.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
11.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
11.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
11.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
10.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
10.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
9.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
7.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
7.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
7.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
6.8
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
6.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
5.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
5.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
4.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
4.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
4.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
4.3
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
3.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
2.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
1.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
1.3
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
1.2
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
1.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1.0
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
0.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
0.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
0.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
0.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
0.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
0.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
4894.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 70.6
Samples: 4
Max nTPM: 246.1
Min nTPM: 3.3
Sample A
Male
9.5
Sample B
Male
3.3
Sample C
Female
246.1
Sample D
Female
23.4
Hippocampal formation nTPM: 4894.5
Samples: 4
Max nTPM: 10454.6
Min nTPM: 38.6
Sample A
Male
38.6
Sample B
Male
2559.7
Sample C
Female
6524.9
Sample D
Female
10454.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.