RNF17

GENERAL INFORMATION

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Gene name

RNF17

Gene description

Ring finger protein 17

Protein class

Predicted intracellular proteins

Predicted localization

Intracellular

Number of transcripts

4
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HUMAN PROTEIN ATLAS INFORMATION

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RNA tissue category

HPA:Tissue enriched (testis)
GTEx:Tissue enriched (testis)

Protein evidence

Evidence at protein level

Protein localization

General cytoplasmic expression of varying intensity, including testis.

ANTIBODY RELIABILITY

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Data reliability
description

Antibody staining mainly not consistent with RNA expression data. Presumed off target binding observed and disregarded.

Data reliability

Uncertain based on 2 antibodies.
HPA039699 , HPA040111
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RNA AND PROTEIN EXPRESSION SUMMARY

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RNA expression (FPKM) Protein expression (score)
Brain
Endocrine tissues
Bone marrow & immune system
Muscle tissues
Lung
Liver & gallbladder
Pancreas
Gastrointestinal tract
Kidney & urinary bladder
Male tissues
Female tissues
Adipose & soft tissue
Skin
Cerebral cortex

Lymph node

Liver

Gallbladder

Colon

Kidney

Testis



PROTEIN EXPRESSION OVERVIEW

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Organ

Expression



RNA EXPRESSION OVERVIEW

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HPA dataset
RNA tissue category:  Tissue enriched (testis)

Organ

Expression

GTEx dataset
RNA tissue category:  Tissue enriched (testis)

Organ

Expression



GENE INFORMATION

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Gene name

RNF17 (HGNC Symbol)

Synonyms

FLJ11045, Mmip-2, SPATA23, TDRD4

Description

Ring finger protein 17 (HGNC Symbol)

Entrez gene summary

This gene is similar to a mouse gene that encodes a testis-specific protein containing a RING finger domain. Alternatively spliced transcript variants encoding different isoforms have been found. [provided by RefSeq, May 2010]

Chromosome

13

Cytoband

q12.12

Chromosome location (bp)

24764152 - 24879921

Protein evidence

Evidence at protein level (all genes)

Ensembl

ENSG00000132972 (version 78.38)

Entrez gene

56163

UniProt

Q9BXT8 (UniProt - Evidence at protein level)

neXtProt

NX_Q9BXT8

Antibodypedia

RNF17 antibodies


PROTEIN BROWSER

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ENST00000255324
 
ENST00000255325
 
ENST00000339524
 
ENST00000418120
 
 
 
 


PROTEIN INFORMATION

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Splice variant

Ensembl

UniProt

Protein class

Gene ontology

Length
(aa)

Molecular mass
(kDa)

Signal peptide
(predicted)

Transmembrane regions
(predicted)

RNF17-001 ENSP00000388892
ENST00000418120
Q5T2J8
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Show » Show » 855 97.7 No 0
RNF17-002 ENSP00000344776
ENST00000339524
Q5T6R1
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Show » 633 71.8 No 0
RNF17-003 ENSP00000255324
ENST00000255324
Q9BXT8
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Show » Show » 1623 184.6 No 0
RNF17-004 ENSP00000255325
ENST00000255325
Q9BXT8
Show all »
Show » Show » 653 73.7 No 0