ATIC

COLON - Expression summary

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Protein expression

h
m
l
n

RNA expression

HPA:29.1 FPKM
GTEx:19.0 RPKM

COLON - Immunohistochemistry

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Annotated protein
expression

Endothelial cells:Low
Glandular cells:High
Peripheral nerve/ganglion:Low

Presumed off target binding observed and disregarded.

 

Antibody staining

Antibody HPA021012

 

Antibody CAB013462

 

Endothelial cells

Medium   Low  

Glandular cells

High   High  

Peripheral nerve/ganglion

Medium   Low  
   
   
   

COLON - HPA RNA-seq

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Average FPKM

29.1

overview Male, age 54
Sample 1
FPKM: 19.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 27.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 29.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 16.9
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 30.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 33.2
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 46.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

19.0

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 17.7
Samples: 149

Max RPKM: 37
Min RPKM: 7.1
Std RPKM: 4.2
Median RPKM: 17.3
GTEX-11TT1-0926-SM-5GU5M 37.0
GTEX-13FTW-2126-SM-5K7YG 28.5
GTEX-146FH-2426-SM-5Q5EW 27.7
GTEX-ZTTD-2626-SM-57WEX 27.6
GTEX-131XG-1526-SM-5GCNQ 27.5
GTEX-11I78-1326-SM-5PNY9 26.7
GTEX-1339X-1726-SM-5P9J9 25.2
GTEX-13G51-2126-SM-5IJD9 25.2
Show all
 

Colon - Transverse

Colon - Transverse
RPKM: 20.2
Samples: 196

Max RPKM: 43.3
Min RPKM: 5
Std RPKM: 5.1
Median RPKM: 20.2
GTEX-11TT1-1026-SM-5PNW7 43.3
GTEX-PWOO-1326-SM-48TCJ 36.9
GTEX-U4B1-1126-SM-4DXV3 32.8
GTEX-146FQ-1926-SM-5NQBY 32.7
GTEX-QDVN-1326-SM-48TZ3 31.5
GTEX-R53T-1326-SM-48FCQ 31.4
GTEX-1128S-1626-SM-5H12O 30.9
GTEX-T5JW-1126-SM-4DM5V 30.5
Show all