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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
932.9
nTPM
HPA Brain:
242.0
nTPM
GTEx:
932.9
nTPM
FANTOM5:
34.2
Scaled Tags Per Million
Pig:
5.4
nTPM
Mouse:
491.4
nTPM
Allen mouse:
14.9
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
242.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 216.1
2586
Male, age 75, left hemisphere
269.2
2666
Male, age 74, left hemisphere
246.2
2828
Female, age 72, unknown
225.8
1870
Female, age 42, unknown
218.4
2411
Female, age 72, unknown
211.9
1833
Male, age 53, unknown
204.8
1827
Male, age 72, unknown
203.5
1830
Male, age 51, unknown
203.3
2019
Male, age 18, unknown
202.5
2219
Male, age 76, both hemispheres
175.6
Dorsal raphe nucleus nTPM: 203.8
2298
Female, age 72, unknown
215.1
1828
Male, age 53, unknown
209.3
2016
Female, age 72, unknown
209.1
2750
Male, age 76, both hemispheres
201.3
2047
Male, age 72, unknown
184.0
Inferior colliculus nTPM: 208.4
2849
Male, age 72, unknown
212.5
1848
Female, age 42, unknown
211.8
1890
Male, age 53, unknown
210.4
2097
Female, age 72, unknown
198.7
Median raphe nucleus nTPM: 191.7
2220
Male, age 76, midline
191.7
Periaquaductal grey, anterior nTPM: 218.3
2502
Female, age 75, unknown
242.5
1795
Male, age 51, unknown
207.2
1947
Male, age 18, unknown
205.1
Periaquaductal grey, dorsal nTPM: 187.8
1840
Male, age 53, unknown
220.6
1831
Male, age 72, unknown
189.2
2464
Female, age 72, unknown
182.7
2850
Male, age 76, both hemispheres
158.6
Periaquaductal grey, lateral nTPM: 184.0
2053
Male, age 18, unknown
196.3
2272
Male, age 74, both hemispheres
184.1
2140
Male, age 76, both hemispheres
171.6
Pretectal area nTPM: 193.0
2407
Male, age 75, both hemispheres
216.1
2825
Male, age 18, unknown
208.8
1817
Female, age 42, unknown
208.1
2007
Male, age 72, unknown
203.1
1816
Male, age 51, unknown
198.0
1815
Male, age 53, unknown
194.1
2224
Female, age 72, unknown
190.1
2316
Male, age 76, right hemisphere
182.4
2273
Male, age 74, both hemispheres
177.6
1944
Female, age 72, unknown
177.3
2667
Female, age 75, unknown
167.4
Red nucleus nTPM: 220.6
2584
Male, age 75, left hemisphere
269.7
2503
Female, age 72, unknown
246.1
1821
Female, age 72, unknown
234.0
2769
Male, age 72, unknown
231.2
1865
Male, age 51, unknown
230.3
2227
Male, age 72, unknown
223.2
2725
Female, age 75, unknown
211.4
1904
Male, age 53, unknown
210.8
2785
Male, age 18, unknown
206.0
2588
Male, age 74, left hemisphere
205.1
1954
Female, age 42, unknown
204.8
2823
Male, age 76, right hemisphere
174.3
Substantia nigra nTPM: 242.0
2665
Male, age 74, both hemispheres
288.1
1851
Male, age 51, unknown
264.4
2699
Male, age 18, unknown
252.5
2241
Male, age 72, unknown
244.5
2590
Female, age 75, unknown
243.2
2583
Male, age 75, right hemisphere
242.3
1916
Female, age 42, unknown
232.7
2409
Female, age 72, unknown
231.4
1941
Male, age 53, unknown
223.6
1889
Female, age 72, unknown
197.6
Superior colliculus nTPM: 212.7
2664
Male, age 75, both hemispheres
266.2
2587
Male, age 74, left hemisphere
239.9
2668
Female, age 75, unknown
224.1
2261
Male, age 18, unknown
208.5
1995
Male, age 72, unknown
207.4
1796
Male, age 53, unknown
207.1
1839
Male, age 51, unknown
203.5
1913
Female, age 42, unknown
203.2
2087
Female, age 72, unknown
185.4
1895
Male, age 76, right hemisphere
181.4
Ventral tegmental area nTPM: 216.7
1915
Female, age 42, unknown
245.9
2223
Female, age 72, unknown
243.7
1942
Male, age 51, unknown
209.7
2021
Male, age 53, unknown
208.7
2410
Female, age 72, unknown
202.3
2218
Male, age 76, both hemispheres
189.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
932.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 932.9
Samples: 139
Max nTPM: 2088.7
Min nTPM: 475.5
Std nTPM: 270.5
Median nTPM: 887.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2088.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1866.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1847.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1725.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1625.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1538.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1497.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1341.1
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1328.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1322.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1319.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1304.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1285.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1233.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1225.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1217.2
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1207.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1205.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1204.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1196.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1174.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1165.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1127.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1107.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1105.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1093.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1093.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1086.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1082.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1081.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1080.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1073.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1068.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1063.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1057.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1055.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1040.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1037.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1034.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1031.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1015.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1015.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1011.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1003.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1000.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1000.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
999.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
990.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
989.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
987.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
984.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
979.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
974.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
968.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
965.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
958.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
955.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
954.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
949.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
948.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
944.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
934.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
918.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
918.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
914.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
905.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
902.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
893.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
887.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
887.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
886.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
878.0
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
877.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
876.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
873.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
871.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
859.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
856.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
852.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
848.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
845.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
844.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
843.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
836.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
831.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
825.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
815.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
812.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
805.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
805.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
799.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
796.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
793.0
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
792.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
782.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
780.0
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
777.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
776.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
770.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
765.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
745.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
742.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
741.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
739.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
735.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
734.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
729.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
728.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
716.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
712.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
702.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
701.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
694.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
694.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
690.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
689.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
681.8
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
681.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
680.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
665.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
663.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
663.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
662.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
662.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
658.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
648.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
647.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
636.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
633.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
631.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
620.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
619.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
604.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
602.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
576.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
567.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
562.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
545.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
475.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
491.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 491.4
Samples: 4
Max nTPM: 533.9
Min nTPM: 457.0
Sample A
Male
533.9
Sample B
Male
457.0
Sample C
Female
466.1
Sample D
Female
508.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.