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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
30.8
nTPM
HPA Brain:
87.2
nTPM
GTEx:
30.8
nTPM
FANTOM5:
86.3
Scaled Tags Per Million
Pig:
37.3
nTPM
Mouse:
24.6
nTPM
Allen mouse:
4.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
87.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 74.3
2586
Male, age 75, left hemisphere
101.7
2411
Female, age 72, unknown
86.8
2666
Male, age 74, left hemisphere
81.1
1827
Male, age 72, unknown
80.5
1830
Male, age 51, unknown
73.3
1833
Male, age 53, unknown
72.1
1870
Female, age 42, unknown
70.9
2828
Female, age 72, unknown
64.5
2219
Male, age 76, both hemispheres
61.1
2019
Male, age 18, unknown
50.8
Dorsal raphe nucleus nTPM: 50.7
2750
Male, age 76, both hemispheres
57.1
2016
Female, age 72, unknown
54.4
2298
Female, age 72, unknown
49.4
1828
Male, age 53, unknown
48.5
2047
Male, age 72, unknown
44.1
Inferior colliculus nTPM: 59.1
2849
Male, age 72, unknown
68.6
1848
Female, age 42, unknown
60.2
2097
Female, age 72, unknown
55.7
1890
Male, age 53, unknown
51.8
Median raphe nucleus nTPM: 45.0
2220
Male, age 76, midline
45.0
Periaquaductal grey, anterior nTPM: 67.7
2502
Female, age 75, unknown
82.2
1795
Male, age 51, unknown
70.8
1947
Male, age 18, unknown
50.2
Periaquaductal grey, dorsal nTPM: 61.7
1831
Male, age 72, unknown
75.9
2464
Female, age 72, unknown
65.9
1840
Male, age 53, unknown
61.8
2850
Male, age 76, both hemispheres
43.1
Periaquaductal grey, lateral nTPM: 68.6
2053
Male, age 18, unknown
96.6
2272
Male, age 74, both hemispheres
63.7
2140
Male, age 76, both hemispheres
45.7
Pretectal area nTPM: 77.2
1816
Male, age 51, unknown
108.5
2407
Male, age 75, both hemispheres
102.3
1815
Male, age 53, unknown
88.8
1944
Female, age 72, unknown
87.9
2825
Male, age 18, unknown
84.9
2007
Male, age 72, unknown
78.3
1817
Female, age 42, unknown
63.4
2273
Male, age 74, both hemispheres
61.8
2224
Female, age 72, unknown
60.1
2316
Male, age 76, right hemisphere
56.8
2667
Female, age 75, unknown
55.9
Red nucleus nTPM: 69.7
2584
Male, age 75, left hemisphere
97.0
2588
Male, age 74, left hemisphere
86.4
2725
Female, age 75, unknown
75.7
2503
Female, age 72, unknown
73.6
1904
Male, age 53, unknown
69.6
1865
Male, age 51, unknown
69.1
1821
Female, age 72, unknown
66.8
1954
Female, age 42, unknown
63.7
2227
Male, age 72, unknown
62.6
2769
Male, age 72, unknown
61.2
2785
Male, age 18, unknown
57.7
2823
Male, age 76, right hemisphere
52.9
Substantia nigra nTPM: 71.4
2583
Male, age 75, right hemisphere
93.5
1916
Female, age 42, unknown
77.5
1941
Male, age 53, unknown
76.8
1889
Female, age 72, unknown
71.4
2409
Female, age 72, unknown
68.7
2590
Female, age 75, unknown
68.0
2699
Male, age 18, unknown
67.4
1851
Male, age 51, unknown
67.3
2241
Male, age 72, unknown
63.1
2665
Male, age 74, both hemispheres
60.7
Superior colliculus nTPM: 87.2
2261
Male, age 18, unknown
122.4
1913
Female, age 42, unknown
105.2
2664
Male, age 75, both hemispheres
90.8
1796
Male, age 53, unknown
89.9
2668
Female, age 75, unknown
88.6
1995
Male, age 72, unknown
81.1
2587
Male, age 74, left hemisphere
80.0
2087
Female, age 72, unknown
76.7
1895
Male, age 76, right hemisphere
69.1
1839
Male, age 51, unknown
68.7
Ventral tegmental area nTPM: 66.1
2223
Female, age 72, unknown
89.5
2410
Female, age 72, unknown
76.1
1915
Female, age 42, unknown
62.7
2218
Male, age 76, both hemispheres
57.2
2021
Male, age 53, unknown
56.2
1942
Male, age 51, unknown
55.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
30.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 30.8
Samples: 139
Max nTPM: 81.0
Min nTPM: 6.1
Std nTPM: 13.0
Median nTPM: 29.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
81.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
79.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
70.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
65.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
62.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
60.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
58.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
56.6
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
51.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
51.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
51.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
49.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
48.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
47.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
46.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
44.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
43.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
41.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
41.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
40.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
39.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
39.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
39.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
39.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
38.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
38.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
38.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
37.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
37.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
36.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
36.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
36.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
36.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
35.5
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
35.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
35.1
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
35.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
35.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
34.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
34.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
34.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
33.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
33.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
33.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
33.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
33.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
33.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
32.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
32.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
32.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
32.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
32.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
31.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
31.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
31.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
31.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
31.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
31.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
31.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
31.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
31.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
30.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
30.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
30.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
30.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
29.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
29.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
29.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
28.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
28.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
28.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
28.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
28.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
28.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
28.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
28.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
27.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
27.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
27.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
26.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
26.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
26.5
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
26.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
26.5
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
26.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
26.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
26.2
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
25.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
25.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
25.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
25.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
24.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
24.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
24.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
24.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
24.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
23.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
23.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
23.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
23.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
22.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
22.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
22.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
22.2
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
22.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
22.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
21.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
21.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
21.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
21.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
20.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
20.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
20.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
19.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
19.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
18.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
18.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
18.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
17.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
17.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
17.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
16.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
16.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
16.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
15.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
14.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
13.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
13.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
13.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
12.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
11.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
10.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.0
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
24.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 24.6
Samples: 4
Max nTPM: 25.5
Min nTPM: 24.2
Sample A
Male
24.3
Sample B
Male
24.2
Sample C
Female
24.3
Sample D
Female
25.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.