EDA

COLON - Expression summary

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RNA expression

HPA:1.2 FPKM
GTEx:1.2 RPKM

COLON - Immunohistochemistry

Pending normal tissue analysis


COLON - HPA RNA-seq

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Average FPKM

1.2

overview Male, age 54
Sample 1
FPKM: 0.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57
Sample 2
FPKM: 0.9
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80
Sample 3
FPKM: 1.0
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68
Sample 4
FPKM: 1.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68
Sample 5
FPKM: 0.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61
Sample 6
FPKM: 1.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80
Sample 7
FPKM: 2.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65

COLON - GTEx RNA-seq

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Average RPKM

1.2

GTEx sample id

RPKM

 

Colon - Sigmoid

Colon - Sigmoid
RPKM: 1.3
Samples: 149

Max RPKM: 2.9
Min RPKM: 0.4
Std RPKM: 0.5
Median RPKM: 1.2
GTEX-ZE7O-2626-SM-51MSS 2.9
GTEX-145MH-2726-SM-5QGQ6 2.8
GTEX-YJ8O-1426-SM-5PNV9 2.5
GTEX-147GR-2826-SM-5RQK8 2.4
GTEX-139TS-2226-SM-5J2N1 2.3
GTEX-145LS-2926-SM-5O99G 2.3
GTEX-11DXY-2026-SM-5N9CZ 2.3
GTEX-11EI6-2626-SM-5PNVT 2.2
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Colon - Transverse

Colon - Transverse
RPKM: 1.2
Samples: 196

Max RPKM: 2.7
Min RPKM: 0.3
Std RPKM: 0.4
Median RPKM: 1.1
GTEX-ZLV1-1226-SM-4WWBX 2.7
GTEX-12ZZZ-2426-SM-5GCNN 2.6
GTEX-14BMV-2426-SM-5S2PP 2.6
GTEX-11DXZ-1726-SM-5H12M 2.4
GTEX-ZXES-1626-SM-5NQ7L 2.3
GTEX-111VG-2226-SM-5N9DU 2.2
GTEX-Z93S-2426-SM-5HL8N 2.2
GTEX-S7SF-1926-SM-4AT5B 2.2
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