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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3936.5
nTPM
GTEx:
3936.5
nTPM
FANTOM5:
4961.1
Scaled Tags Per Million
Pig:
11537.6
nTPM
Mouse:
28047.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA013440
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB022486
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB034887
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB034888
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
3936.5
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 3936.5
Samples: 105
Max nTPM: 7726.3
Min nTPM: 1295.0
Std nTPM: 1309.3
Median nTPM: 0.0
352_1
62 years, male
7726.3
172_1
72 years, female
7208.1
319_1
81 years, male
6599.5
6_1
73 years, female
6597.8
354_1
81 years, female
6408.9
386_1
76 years, male
6360.9
425_1
59 years, female
5681.5
355_1
70 years, female
5653.1
356_1
87 years, female
5567.5
243_1
75 years, male
5540.8
335_1
73 years, female
5396.7
350_1
84 years, female
5380.0
321_1
62 years, female
5362.0
163_1
78 years, male
5237.6
375_1
74 years, female
5166.9
286_1
68 years, female
5163.0
376_1
75 years, female
5116.3
349_1
83 years, male
5110.8
189_1
76 years, male
5093.2
229_1
69 years, female
5041.0
237_1
82 years, male
5039.2
447_1
81 years, male
5002.5
389_1
86 years, female
4998.1
353_1
82 years, female
4962.8
316_1
62 years, male
4941.0
292_1
71 years, male
4888.6
177_1
74 years, male
4853.2
347_1
72 years, male
4821.1
246_1
77 years, male
4791.4
379_1
60 years, male
4784.7
126_1
63 years, male
4704.6
318_1
68 years, male
4674.8
324_1
76 years, male
4672.6
377_1
82 years, female
4621.9
9_1
66 years, female
4602.3
218_1
71 years, female
4576.0
115_1
83 years, male
4573.9
404_1
82 years, female
4564.5
35_1
74 years, female
4462.1
153_1
70 years, female
4440.0
394_1
75 years, female
4435.8
480_1
63 years, male
4420.4
320_1
89 years, female
4394.7
526_1
61 years, male
4388.0
251_1
78 years, male
4362.5
406_1
79 years, male
4232.7
503_1
68 years, male
4191.7
396_1
62 years, male
4113.3
468_1
89 years, male
4102.9
405_1
91 years, male
3995.6
517_1
88 years, male
3929.3
137_1
83 years, male
3918.6
291_1
76 years, male
3858.9
99_1
64 years, male
3816.5
142_1
61 years, female
3812.9
266_1
85 years, male
3772.0
265_1
87 years, male
3771.6
415_1
77 years, female
3632.1
264_1
73 years, female
3608.9
117_1
61 years, male
3603.5
348_1
84 years, male
3566.3
254_1
77 years, female
3510.3
518_1
75 years, female
3505.2
81_1
67 years, male
3498.4
322_1
76 years, male
3498.3
145_1
84 years, male
3443.4
293_1
68 years, female
3396.2
499_1
55 years, female
3371.5
351_1
91 years, male
3363.6
217_1
76 years, male
3360.2
384_1
83 years, male
3329.7
32_1
67 years, male
3303.5
414_1
84 years, female
3236.6
317_1
60 years, male
3229.5
43_1
64 years, female
3182.6
18_1
88 years, male
3161.4
2_1
77 years, female
3133.0
162_1
79 years, female
3090.1
315_1
62 years, female
3005.0
120_1
70 years, female
2967.8
17_1
71 years, male
2964.4
173_1
67 years, male
2958.6
506_1
65 years, male
2921.6
313_1
79 years, female
2915.7
466_1
57 years, female
2862.6
4_1
88 years, female
2735.4
42_1
85 years, male
2706.1
311_1
78 years, male
2697.1
109_1
81 years, female
2489.8
288_1
66 years, female
2456.0
139_1
64 years, female
2414.8
452_1
88 years, female
2384.7
295_1
61 years, female
2327.8
490_1
67 years, female
2299.2
149_1
88 years, male
2185.2
307_1
66 years, female
2107.6
119_1
70 years, female
2103.2
413_1
59 years, female
1934.4
314_1
67 years, male
1765.1
89_1
63 years, male
1752.4
495_1
57 years, female
1724.9
491_1
89 years, female
1611.7
501_1
88 years, male
1440.5
41_1
94 years, female
1377.7
308_1
70 years, female
1295.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.