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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
838.0
nTPM
HPA Brain:
411.7
nTPM
GTEx:
838.0
nTPM
FANTOM5:
326.5
Scaled Tags Per Million
Pig:
857.9
nTPM
Mouse:
223.6
nTPM
Allen mouse:
15.5
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
411.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 364.6
2828
Female, age 72, unknown
410.7
2411
Female, age 72, unknown
390.1
1870
Female, age 42, unknown
389.5
1827
Male, age 72, unknown
384.1
1833
Male, age 53, unknown
375.0
1830
Male, age 51, unknown
364.5
2666
Male, age 74, left hemisphere
364.3
2019
Male, age 18, unknown
354.7
2586
Male, age 75, left hemisphere
334.0
2219
Male, age 76, both hemispheres
279.0
Dorsal raphe nucleus nTPM: 399.4
2298
Female, age 72, unknown
463.2
2750
Male, age 76, both hemispheres
398.4
1828
Male, age 53, unknown
389.1
2016
Female, age 72, unknown
380.5
2047
Male, age 72, unknown
365.8
Inferior colliculus nTPM: 349.2
2097
Female, age 72, unknown
397.8
1890
Male, age 53, unknown
339.7
2849
Male, age 72, unknown
334.1
1848
Female, age 42, unknown
325.2
Median raphe nucleus nTPM: 411.7
2220
Male, age 76, midline
411.7
Periaquaductal grey, anterior nTPM: 352.5
1947
Male, age 18, unknown
369.5
1795
Male, age 51, unknown
348.9
2502
Female, age 75, unknown
339.2
Periaquaductal grey, dorsal nTPM: 348.7
2850
Male, age 76, both hemispheres
380.8
1840
Male, age 53, unknown
360.1
1831
Male, age 72, unknown
343.9
2464
Female, age 72, unknown
310.0
Periaquaductal grey, lateral nTPM: 353.1
2053
Male, age 18, unknown
357.6
2140
Male, age 76, both hemispheres
355.5
2272
Male, age 74, both hemispheres
346.3
Pretectal area nTPM: 376.2
1817
Female, age 42, unknown
414.3
2667
Female, age 75, unknown
404.3
1815
Male, age 53, unknown
396.2
2273
Male, age 74, both hemispheres
389.0
1816
Male, age 51, unknown
386.5
2224
Female, age 72, unknown
384.8
2007
Male, age 72, unknown
373.1
2825
Male, age 18, unknown
366.9
1944
Female, age 72, unknown
362.6
2316
Male, age 76, right hemisphere
343.5
2407
Male, age 75, both hemispheres
316.4
Red nucleus nTPM: 372.5
1821
Female, age 72, unknown
471.2
2503
Female, age 72, unknown
402.6
2823
Male, age 76, right hemisphere
400.3
1904
Male, age 53, unknown
393.9
1865
Male, age 51, unknown
381.5
2227
Male, age 72, unknown
376.4
1954
Female, age 42, unknown
372.4
2769
Male, age 72, unknown
370.5
2725
Female, age 75, unknown
357.8
2785
Male, age 18, unknown
356.5
2588
Male, age 74, left hemisphere
310.4
2584
Male, age 75, left hemisphere
276.7
Substantia nigra nTPM: 395.0
1916
Female, age 42, unknown
481.6
1851
Male, age 51, unknown
426.4
2699
Male, age 18, unknown
423.0
2241
Male, age 72, unknown
411.7
1889
Female, age 72, unknown
401.2
2665
Male, age 74, both hemispheres
400.1
1941
Male, age 53, unknown
366.2
2409
Female, age 72, unknown
364.5
2590
Female, age 75, unknown
350.8
2583
Male, age 75, right hemisphere
324.7
Superior colliculus nTPM: 368.2
2587
Male, age 74, left hemisphere
409.9
2668
Female, age 75, unknown
409.3
1913
Female, age 42, unknown
396.3
1995
Male, age 72, unknown
373.4
1796
Male, age 53, unknown
367.0
2087
Female, age 72, unknown
359.6
2261
Male, age 18, unknown
347.9
2664
Male, age 75, both hemispheres
347.5
1839
Male, age 51, unknown
339.3
1895
Male, age 76, right hemisphere
331.6
Ventral tegmental area nTPM: 398.1
1915
Female, age 42, unknown
443.9
2410
Female, age 72, unknown
430.4
2218
Male, age 76, both hemispheres
394.0
2223
Female, age 72, unknown
375.4
1942
Male, age 51, unknown
374.0
2021
Male, age 53, unknown
370.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
838.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 838.0
Samples: 139
Max nTPM: 1594.4
Min nTPM: 518.6
Std nTPM: 174.2
Median nTPM: 818.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1594.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
1428.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
1341.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1274.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1266.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1168.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1145.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1125.2
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1113.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1108.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1077.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
1067.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1059.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1050.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1045.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1042.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1037.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1029.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1009.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1002.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
989.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
975.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
974.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
972.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
966.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
963.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
956.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
945.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
945.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
945.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
944.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
944.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
941.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
940.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
935.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
932.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
925.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
919.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
918.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
908.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
901.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
899.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
893.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
893.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
893.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
890.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
885.0
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
880.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
878.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
877.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
877.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
876.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
869.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
866.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
862.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
862.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
859.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
852.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
847.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
845.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
845.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
844.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
843.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
839.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
839.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
827.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
822.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
822.3
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
820.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
818.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
816.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
815.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
807.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
805.6
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
805.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
803.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
802.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
785.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
779.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
776.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
776.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
776.3
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
775.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
769.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
768.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
767.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
759.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
753.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
753.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
753.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
752.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
743.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
739.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
738.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
734.8
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
732.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
731.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
725.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
724.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
723.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
721.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
720.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
716.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
715.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
710.3
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
708.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
707.9
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
703.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
702.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
701.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
699.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
698.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
696.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
696.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
695.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
692.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
692.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
689.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
683.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
677.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
667.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
666.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
660.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
655.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
652.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
642.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
642.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
638.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
637.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
633.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
628.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
624.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
597.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
593.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
573.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
566.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
564.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
527.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
518.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
223.6
Mouse sample
Sample description
nTPM
Midbrain nTPM: 223.6
Samples: 4
Max nTPM: 242.5
Min nTPM: 211.5
Sample A
Male
242.5
Sample B
Male
219.4
Sample C
Female
211.5
Sample D
Female
221.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.