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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1000.2
nTPM
HPA Brain:
334.5
nTPM
GTEx:
1000.2
nTPM
FANTOM5:
36.5
Scaled Tags Per Million
Pig:
140.0
nTPM
Mouse:
838.4
nTPM
Allen mouse:
0.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
334.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 290.6
2666
Male, age 74, left hemisphere
353.8
1870
Female, age 42, unknown
339.3
2586
Male, age 75, left hemisphere
317.8
2828
Female, age 72, unknown
291.0
1833
Male, age 53, unknown
278.6
2411
Female, age 72, unknown
273.2
2019
Male, age 18, unknown
271.9
1827
Male, age 72, unknown
270.7
1830
Male, age 51, unknown
270.4
2219
Male, age 76, both hemispheres
239.2
Dorsal raphe nucleus nTPM: 263.2
2016
Female, age 72, unknown
278.1
2750
Male, age 76, both hemispheres
273.8
1828
Male, age 53, unknown
269.5
2298
Female, age 72, unknown
268.6
2047
Male, age 72, unknown
226.0
Inferior colliculus nTPM: 286.0
1890
Male, age 53, unknown
318.0
2849
Male, age 72, unknown
312.1
2097
Female, age 72, unknown
257.5
1848
Female, age 42, unknown
256.6
Median raphe nucleus nTPM: 274.6
2220
Male, age 76, midline
274.6
Periaquaductal grey, anterior nTPM: 270.7
2502
Female, age 75, unknown
321.8
1795
Male, age 51, unknown
257.7
1947
Male, age 18, unknown
232.5
Periaquaductal grey, dorsal nTPM: 287.5
2850
Male, age 76, both hemispheres
334.4
1840
Male, age 53, unknown
291.4
1831
Male, age 72, unknown
267.0
2464
Female, age 72, unknown
257.0
Periaquaductal grey, lateral nTPM: 258.4
2053
Male, age 18, unknown
300.3
2140
Male, age 76, both hemispheres
261.1
2272
Male, age 74, both hemispheres
213.8
Pretectal area nTPM: 272.3
1815
Male, age 53, unknown
318.4
1817
Female, age 42, unknown
303.0
1816
Male, age 51, unknown
291.2
2825
Male, age 18, unknown
284.7
2407
Male, age 75, both hemispheres
270.1
2224
Female, age 72, unknown
269.9
1944
Female, age 72, unknown
267.9
2316
Male, age 76, right hemisphere
266.3
2007
Male, age 72, unknown
261.6
2667
Female, age 75, unknown
241.8
2273
Male, age 74, both hemispheres
219.9
Red nucleus nTPM: 314.9
2503
Female, age 72, unknown
372.3
1865
Male, age 51, unknown
364.2
1904
Male, age 53, unknown
342.0
2584
Male, age 75, left hemisphere
340.4
1821
Female, age 72, unknown
333.9
2725
Female, age 75, unknown
326.8
2769
Male, age 72, unknown
302.4
2785
Male, age 18, unknown
296.4
2227
Male, age 72, unknown
285.0
2588
Male, age 74, left hemisphere
282.2
2823
Male, age 76, right hemisphere
267.8
1954
Female, age 42, unknown
264.9
Substantia nigra nTPM: 334.5
2409
Female, age 72, unknown
441.1
2699
Male, age 18, unknown
402.7
2241
Male, age 72, unknown
385.0
2665
Male, age 74, both hemispheres
373.9
1851
Male, age 51, unknown
367.0
1889
Female, age 72, unknown
298.0
2590
Female, age 75, unknown
293.5
1916
Female, age 42, unknown
292.3
2583
Male, age 75, right hemisphere
266.7
1941
Male, age 53, unknown
224.6
Superior colliculus nTPM: 293.1
1913
Female, age 42, unknown
383.8
2587
Male, age 74, left hemisphere
368.6
1995
Male, age 72, unknown
349.9
2668
Female, age 75, unknown
288.3
1796
Male, age 53, unknown
284.9
2664
Male, age 75, both hemispheres
277.0
1839
Male, age 51, unknown
256.1
2261
Male, age 18, unknown
246.5
2087
Female, age 72, unknown
238.6
1895
Male, age 76, right hemisphere
236.7
Ventral tegmental area nTPM: 304.9
1915
Female, age 42, unknown
346.1
2223
Female, age 72, unknown
334.2
2021
Male, age 53, unknown
309.7
2410
Female, age 72, unknown
304.7
1942
Male, age 51, unknown
271.4
2218
Male, age 76, both hemispheres
263.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
1000.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 1000.2
Samples: 139
Max nTPM: 3434.5
Min nTPM: 298.9
Std nTPM: 452.7
Median nTPM: 884.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3434.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2505.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2443.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2375.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2237.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
2220.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
1839.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
1651.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
1642.5
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
1635.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1620.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
1589.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
1581.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1565.2
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
1539.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1527.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1460.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
1411.2
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
1407.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
1371.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
1352.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
1304.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
1274.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
1249.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
1248.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1240.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1230.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1227.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
1196.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1187.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
1186.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1170.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
1155.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
1144.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
1143.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1141.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
1135.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1124.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1118.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
1113.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
1111.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1091.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
1089.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
1088.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
1086.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
1083.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1083.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
1060.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1057.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
1056.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1053.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1052.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1050.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
1047.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1040.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
1039.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
1038.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
1030.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1024.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1010.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1008.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
979.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
957.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
943.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
920.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
914.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
907.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
893.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
884.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
884.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
880.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
879.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
873.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
866.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
857.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
852.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
833.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
829.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
822.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
812.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
812.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
811.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
805.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
803.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
800.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
798.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
788.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
784.4
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
783.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
780.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
778.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
767.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
758.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
746.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
745.9
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
745.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
732.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
732.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
728.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
723.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
723.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
721.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
720.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
713.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
703.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
701.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
695.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
690.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
689.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
684.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
666.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
662.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
660.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
648.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
644.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
640.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
634.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
622.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
619.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
618.4
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
613.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
612.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
607.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
591.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
579.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
577.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
573.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
565.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
564.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
558.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
555.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
549.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
546.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
541.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
507.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
449.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
440.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
405.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
298.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
838.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 838.4
Samples: 4
Max nTPM: 918.7
Min nTPM: 752.9
Sample A
Male
918.7
Sample B
Male
821.0
Sample C
Female
752.9
Sample D
Female
861.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.