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WT1
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  • WT1
PROTEIN STRUCTURE
ANTIBODIES
AND
VALIDATION
Protein structures
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

WT1
Synonyms AWT1, GUD, NPHS4, WAGR, WIT-2
Gene descriptioni

Full gene name according to HGNC.

WT1 transcription factor
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Disease related genes
Human disease related genes
Transcription factors
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Read more
Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband p13
Chromosome location (bp) 32387775 - 32435564
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

8
Ensembl ENSG00000184937 (version 103.38)
Entrez gene 7490
HGNC HGNC:12796
UniProt P19544 (UniProt - Evidence at protein level)
neXtProt NX_P19544
Antibodypedia WT1 antibodies


PROTEIN STRUCTUREi

The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).

In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl

Read more

Predicted


Description: Structure prediction from Alphafold project. Structure version 2

# Chains: 1      # Clinical variants: 0      # Population variants: 0

Antigens:

Off
On

Variants:

Off
Clinical
Population

Color scheme:

Confidence
Residue index
Chain name

Autorotate:

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On



PROTEIN BROWSERi

The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.

At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.

Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).

The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).

If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.

Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
WT1-201
WT1-203
WT1-204
WT1-205
WT1-208
WT1-209
WT1-210
WT1-212


PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Splice variant UniProt Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
WT1-201
ENSP00000331327
ENST00000332351
J3KNN9 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
502 aa
54.9 kDa
No 0
WT1-203
ENSP00000368370
ENST00000379079
P19544 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Cancer-related genes
   Candidate cancer biomarkers
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Disease related genes
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000976 [transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0001570 [vasculogenesis]
GO:0001657 [ureteric bud development]
GO:0001658 [branching involved in ureteric bud morphogenesis]
GO:0001822 [kidney development]
GO:0003156 [regulation of animal organ formation]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0007281 [germ cell development]
GO:0007356 [thorax and anterior abdomen determination]
GO:0007507 [heart development]
GO:0007530 [sex determination]
GO:0008270 [zinc ion binding]
GO:0008285 [negative regulation of cell population proliferation]
GO:0008380 [RNA splicing]
GO:0008406 [gonad development]
GO:0008584 [male gonad development]
GO:0009888 [tissue development]
GO:0010385 [double-stranded methylated DNA binding]
GO:0010628 [positive regulation of gene expression]
GO:0016607 [nuclear speck]
GO:0030308 [negative regulation of cell growth]
GO:0030325 [adrenal gland development]
GO:0030539 [male genitalia development]
GO:0030855 [epithelial cell differentiation]
GO:0032835 [glomerulus development]
GO:0032836 [glomerular basement membrane development]
GO:0035802 [adrenal cortex formation]
GO:0043010 [camera-type eye development]
GO:0043066 [negative regulation of apoptotic process]
GO:0043565 [sequence-specific DNA binding]
GO:0044729 [hemi-methylated DNA-binding]
GO:0045892 [negative regulation of transcription, DNA-templated]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0060231 [mesenchymal to epithelial transition]
GO:0060421 [positive regulation of heart growth]
GO:0060539 [diaphragm development]
GO:0060923 [cardiac muscle cell fate commitment]
GO:0061032 [visceral serous pericardium development]
GO:0070742 [C2H2 zinc finger domain binding]
GO:0071320 [cellular response to cAMP]
GO:0071371 [cellular response to gonadotropin stimulus]
GO:0072075 [metanephric mesenchyme development]
GO:0072112 [glomerular visceral epithelial cell differentiation]
GO:0072166 [posterior mesonephric tubule development]
GO:0072207 [metanephric epithelium development]
GO:0072284 [metanephric S-shaped body morphogenesis]
GO:0072302 [negative regulation of metanephric glomerular mesangial cell proliferation]
GO:1902895 [positive regulation of pri-miRNA transcription by RNA polymerase II]
GO:1905643 [positive regulation of DNA methylation]
GO:2000020 [positive regulation of male gonad development]
GO:2000195 [negative regulation of female gonad development]
GO:2001076 [positive regulation of metanephric ureteric bud development]
Show all
302 aa
34.4 kDa
No 0
WT1-204
ENSP00000413452
ENST00000448076
H0Y7K5 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
519 aa
56.6 kDa
No 0
WT1-205
ENSP00000415516
ENST00000452863
A0A0A0MT54 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
522 aa
56.9 kDa
No 0
WT1-208
ENSP00000435624
ENST00000527882
H0YED9 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
178 aa
20.1 kDa
No 0
WT1-209
ENSP00000435307
ENST00000530998
P19544 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Transcription factors
   Zinc-coordinating DNA-binding domains
Cancer-related genes
   Candidate cancer biomarkers
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Disease related genes
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Show all
GO:0000122 [negative regulation of transcription by RNA polymerase II]
GO:0000785 [chromatin]
GO:0000976 [transcription regulatory region sequence-specific DNA binding]
GO:0000978 [RNA polymerase II cis-regulatory region sequence-specific DNA binding]
GO:0000981 [DNA-binding transcription factor activity, RNA polymerase II-specific]
GO:0001228 [DNA-binding transcription activator activity, RNA polymerase II-specific]
GO:0001570 [vasculogenesis]
GO:0001657 [ureteric bud development]
GO:0001658 [branching involved in ureteric bud morphogenesis]
GO:0001822 [kidney development]
GO:0003156 [regulation of animal organ formation]
GO:0003677 [DNA binding]
GO:0003700 [DNA-binding transcription factor activity]
GO:0003723 [RNA binding]
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005730 [nucleolus]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0006357 [regulation of transcription by RNA polymerase II]
GO:0007281 [germ cell development]
GO:0007356 [thorax and anterior abdomen determination]
GO:0007507 [heart development]
GO:0007530 [sex determination]
GO:0008270 [zinc ion binding]
GO:0008285 [negative regulation of cell population proliferation]
GO:0008380 [RNA splicing]
GO:0008406 [gonad development]
GO:0008584 [male gonad development]
GO:0009888 [tissue development]
GO:0010385 [double-stranded methylated DNA binding]
GO:0010628 [positive regulation of gene expression]
GO:0016607 [nuclear speck]
GO:0030308 [negative regulation of cell growth]
GO:0030325 [adrenal gland development]
GO:0030539 [male genitalia development]
GO:0030855 [epithelial cell differentiation]
GO:0032835 [glomerulus development]
GO:0032836 [glomerular basement membrane development]
GO:0035802 [adrenal cortex formation]
GO:0043010 [camera-type eye development]
GO:0043066 [negative regulation of apoptotic process]
GO:0043565 [sequence-specific DNA binding]
GO:0044729 [hemi-methylated DNA-binding]
GO:0045892 [negative regulation of transcription, DNA-templated]
GO:0045893 [positive regulation of transcription, DNA-templated]
GO:0045944 [positive regulation of transcription by RNA polymerase II]
GO:0046872 [metal ion binding]
GO:0060231 [mesenchymal to epithelial transition]
GO:0060421 [positive regulation of heart growth]
GO:0060539 [diaphragm development]
GO:0060923 [cardiac muscle cell fate commitment]
GO:0061032 [visceral serous pericardium development]
GO:0070742 [C2H2 zinc finger domain binding]
GO:0071320 [cellular response to cAMP]
GO:0071371 [cellular response to gonadotropin stimulus]
GO:0072075 [metanephric mesenchyme development]
GO:0072112 [glomerular visceral epithelial cell differentiation]
GO:0072166 [posterior mesonephric tubule development]
GO:0072207 [metanephric epithelium development]
GO:0072284 [metanephric S-shaped body morphogenesis]
GO:0072302 [negative regulation of metanephric glomerular mesangial cell proliferation]
GO:1902895 [positive regulation of pri-miRNA transcription by RNA polymerase II]
GO:1905643 [positive regulation of DNA methylation]
GO:2000020 [positive regulation of male gonad development]
GO:2000195 [negative regulation of female gonad development]
GO:2001076 [positive regulation of metanephric ureteric bud development]
Show all
288 aa
33.1 kDa
No 0
WT1-210
ENSP00000492269
ENST00000639563
A0A1W2PQQ0 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
505 aa
55.2 kDa
No 0
WT1-212
ENSP00000491984
ENST00000640146
A0A1W2PR07 [Direct mapping]
Wilms tumor protein
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Cancer-related genes
   Mutated cancer genes
   Mutational cancer driver genes
   COSMIC somatic mutations in cancer genes
   COSMIC Splicing Mutations
   COSMIC Somatic Mutations
   COSMIC Nonsense Mutations
   COSMIC Missense Mutations
   COSMIC Large Deletions
   COSMIC Germline Mutations
   COSMIC Frameshift Mutations
   COSMIC Translocations
Human disease related genes
   Cancers
   Cancers of soft tissues and bone
   Cancers of the urinary system
   Reproductive system diseases
   Reproductive system diseases
   Urinary system diseases
   Kidney diseases
Show all
GO:0003677 [DNA binding]
GO:0003723 [RNA binding]
GO:0005634 [nucleus]
GO:0005654 [nucleoplasm]
GO:0005737 [cytoplasm]
GO:0005829 [cytosol]
GO:0006355 [regulation of transcription, DNA-templated]
GO:0016607 [nuclear speck]
GO:0046872 [metal ion binding]
Show all
297 aa
34 kDa
No 0

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The Human Protein Atlas project is funded
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