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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
29.8
nTPM
HPA Brain:
67.8
nTPM
GTEx:
29.8
nTPM
FANTOM5:
33.6
Scaled Tags Per Million
Pig:
23.8
nTPM
Mouse:
67.5
nTPM
Allen mouse:
1.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
67.8
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 60.2
2411
Female, age 72, unknown
70.1
1870
Female, age 42, unknown
67.7
1827
Male, age 72, unknown
64.2
2219
Male, age 76, both hemispheres
63.6
1833
Male, age 53, unknown
61.9
2666
Male, age 74, left hemisphere
59.8
1830
Male, age 51, unknown
58.4
2586
Male, age 75, left hemisphere
55.5
2828
Female, age 72, unknown
51.3
2019
Male, age 18, unknown
49.3
Dorsal raphe nucleus nTPM: 62.7
2298
Female, age 72, unknown
64.7
2047
Male, age 72, unknown
64.3
2016
Female, age 72, unknown
61.8
1828
Male, age 53, unknown
61.4
2750
Male, age 76, both hemispheres
61.4
Inferior colliculus nTPM: 67.8
2097
Female, age 72, unknown
72.7
2849
Male, age 72, unknown
66.6
1848
Female, age 42, unknown
66.0
1890
Male, age 53, unknown
65.8
Median raphe nucleus nTPM: 63.1
2220
Male, age 76, midline
63.1
Periaquaductal grey, anterior nTPM: 62.5
1947
Male, age 18, unknown
66.6
2502
Female, age 75, unknown
62.2
1795
Male, age 51, unknown
58.8
Periaquaductal grey, dorsal nTPM: 65.0
1840
Male, age 53, unknown
77.1
2464
Female, age 72, unknown
62.6
1831
Male, age 72, unknown
60.5
2850
Male, age 76, both hemispheres
59.6
Periaquaductal grey, lateral nTPM: 58.3
2053
Male, age 18, unknown
63.9
2140
Male, age 76, both hemispheres
57.7
2272
Male, age 74, both hemispheres
53.3
Pretectal area nTPM: 62.4
2224
Female, age 72, unknown
69.8
1816
Male, age 51, unknown
68.0
2825
Male, age 18, unknown
66.8
2007
Male, age 72, unknown
64.6
1944
Female, age 72, unknown
61.6
2316
Male, age 76, right hemisphere
61.4
1815
Male, age 53, unknown
60.6
1817
Female, age 42, unknown
59.7
2667
Female, age 75, unknown
58.9
2273
Male, age 74, both hemispheres
57.8
2407
Male, age 75, both hemispheres
56.7
Red nucleus nTPM: 56.4
1821
Female, age 72, unknown
63.9
2503
Female, age 72, unknown
61.7
2725
Female, age 75, unknown
59.8
1954
Female, age 42, unknown
59.2
2588
Male, age 74, left hemisphere
57.4
2823
Male, age 76, right hemisphere
56.3
1904
Male, age 53, unknown
55.9
1865
Male, age 51, unknown
53.2
2227
Male, age 72, unknown
53.1
2584
Male, age 75, left hemisphere
52.8
2769
Male, age 72, unknown
52.8
2785
Male, age 18, unknown
51.1
Substantia nigra nTPM: 66.6
2241
Male, age 72, unknown
86.2
2409
Female, age 72, unknown
73.6
1851
Male, age 51, unknown
68.8
1916
Female, age 42, unknown
67.4
1889
Female, age 72, unknown
66.8
2699
Male, age 18, unknown
62.5
2583
Male, age 75, right hemisphere
62.0
2590
Female, age 75, unknown
60.6
1941
Male, age 53, unknown
60.3
2665
Male, age 74, both hemispheres
57.9
Superior colliculus nTPM: 60.7
2261
Male, age 18, unknown
68.1
2668
Female, age 75, unknown
66.0
1796
Male, age 53, unknown
64.3
1895
Male, age 76, right hemisphere
63.5
2587
Male, age 74, left hemisphere
61.7
2087
Female, age 72, unknown
61.3
1839
Male, age 51, unknown
60.3
1913
Female, age 42, unknown
57.7
2664
Male, age 75, both hemispheres
54.7
1995
Male, age 72, unknown
49.8
Ventral tegmental area nTPM: 64.1
2410
Female, age 72, unknown
67.4
1942
Male, age 51, unknown
65.1
2218
Male, age 76, both hemispheres
65.1
1915
Female, age 42, unknown
64.9
2223
Female, age 72, unknown
63.7
2021
Male, age 53, unknown
58.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
29.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 29.8
Samples: 139
Max nTPM: 61.3
Min nTPM: 12.2
Std nTPM: 9.8
Median nTPM: 28.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
61.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
57.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
56.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
55.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
50.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
50.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
48.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
47.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
45.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
44.8
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
44.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
43.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
43.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
43.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
42.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
42.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
41.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
41.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
41.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
41.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
40.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
40.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
40.2
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
39.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
38.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
38.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
38.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
37.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
37.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
37.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
37.1
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
36.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
36.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
36.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
36.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
36.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
36.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
35.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
35.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
34.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
34.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
34.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
34.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
33.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
33.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
33.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
32.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
32.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
31.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
31.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
31.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
31.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
31.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
31.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
30.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
30.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
30.3
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
29.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
29.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
29.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
28.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
28.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
28.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
28.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
28.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
28.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
28.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
28.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
28.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
27.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
27.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
27.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
27.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
27.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
27.1
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
26.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
26.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
26.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
26.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
26.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
25.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
25.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
25.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
25.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
25.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
25.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
25.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
24.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
24.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
24.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
24.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
24.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
23.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
23.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
23.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
23.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
23.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
23.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
22.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
22.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
22.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
22.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
22.5
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
22.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
21.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
21.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
21.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
21.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
21.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
20.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
20.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
20.5
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
20.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
20.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
20.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
19.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
19.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
19.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
19.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
19.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
18.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
18.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
16.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
15.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
14.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
14.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
14.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
14.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
12.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
67.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 67.5
Samples: 4
Max nTPM: 70.7
Min nTPM: 59.7
Sample A
Male
59.7
Sample B
Male
69.6
Sample C
Female
70.7
Sample D
Female
70.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.