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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
841.8
nTPM
HPA Brain:
460.2
nTPM
GTEx:
841.8
nTPM
FANTOM5:
558.2
Scaled Tags Per Million
Pig:
464.6
nTPM
Mouse:
402.8
nTPM
Allen mouse:
12.5
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
460.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 314.8
2019
Male, age 18, unknown
639.8
2586
Male, age 75, left hemisphere
526.9
2828
Female, age 72, unknown
327.2
1833
Male, age 53, unknown
288.8
1830
Male, age 51, unknown
264.0
1827
Male, age 72, unknown
254.5
2411
Female, age 72, unknown
252.9
1870
Female, age 42, unknown
246.7
2666
Male, age 74, left hemisphere
209.3
2219
Male, age 76, both hemispheres
138.0
Dorsal raphe nucleus nTPM: 366.6
1828
Male, age 53, unknown
481.7
2047
Male, age 72, unknown
406.1
2016
Female, age 72, unknown
363.7
2750
Male, age 76, both hemispheres
302.1
2298
Female, age 72, unknown
279.6
Inferior colliculus nTPM: 274.5
1848
Female, age 42, unknown
309.2
2097
Female, age 72, unknown
295.0
1890
Male, age 53, unknown
251.6
2849
Male, age 72, unknown
242.1
Median raphe nucleus nTPM: 339.2
2220
Male, age 76, midline
339.2
Periaquaductal grey, anterior nTPM: 299.0
2502
Female, age 75, unknown
392.2
1795
Male, age 51, unknown
299.5
1947
Male, age 18, unknown
205.3
Periaquaductal grey, dorsal nTPM: 292.1
2850
Male, age 76, both hemispheres
467.6
2464
Female, age 72, unknown
293.9
1840
Male, age 53, unknown
228.4
1831
Male, age 72, unknown
178.3
Periaquaductal grey, lateral nTPM: 340.5
2140
Male, age 76, both hemispheres
460.5
2272
Male, age 74, both hemispheres
320.8
2053
Male, age 18, unknown
240.3
Pretectal area nTPM: 316.2
2273
Male, age 74, both hemispheres
445.0
2316
Male, age 76, right hemisphere
390.5
1817
Female, age 42, unknown
385.9
1944
Female, age 72, unknown
341.9
2667
Female, age 75, unknown
341.4
1816
Male, age 51, unknown
318.6
2007
Male, age 72, unknown
304.0
2224
Female, age 72, unknown
289.5
1815
Male, age 53, unknown
254.0
2407
Male, age 75, both hemispheres
208.8
2825
Male, age 18, unknown
198.7
Red nucleus nTPM: 392.0
1821
Female, age 72, unknown
538.6
2503
Female, age 72, unknown
484.9
2227
Male, age 72, unknown
471.2
2785
Male, age 18, unknown
437.6
2769
Male, age 72, unknown
431.8
1954
Female, age 42, unknown
422.4
2725
Female, age 75, unknown
367.1
2823
Male, age 76, right hemisphere
346.2
1865
Male, age 51, unknown
330.1
1904
Male, age 53, unknown
324.7
2588
Male, age 74, left hemisphere
301.5
2584
Male, age 75, left hemisphere
248.3
Substantia nigra nTPM: 460.2
1916
Female, age 42, unknown
650.3
2699
Male, age 18, unknown
610.2
1851
Male, age 51, unknown
585.6
2241
Male, age 72, unknown
552.0
2409
Female, age 72, unknown
516.3
2590
Female, age 75, unknown
432.2
2665
Male, age 74, both hemispheres
343.4
1889
Female, age 72, unknown
340.3
1941
Male, age 53, unknown
310.3
2583
Male, age 75, right hemisphere
261.7
Superior colliculus nTPM: 274.8
1796
Male, age 53, unknown
417.1
2664
Male, age 75, both hemispheres
345.4
1839
Male, age 51, unknown
308.4
2087
Female, age 72, unknown
292.5
2587
Male, age 74, left hemisphere
287.4
1995
Male, age 72, unknown
268.2
1913
Female, age 42, unknown
227.1
2261
Male, age 18, unknown
224.9
1895
Male, age 76, right hemisphere
188.9
2668
Female, age 75, unknown
187.9
Ventral tegmental area nTPM: 384.0
2021
Male, age 53, unknown
472.7
2410
Female, age 72, unknown
434.0
1915
Female, age 42, unknown
424.2
2218
Male, age 76, both hemispheres
373.6
2223
Female, age 72, unknown
310.3
1942
Male, age 51, unknown
289.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
841.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 841.8
Samples: 139
Max nTPM: 3457.9
Min nTPM: 52.1
Std nTPM: 706.4
Median nTPM: 651.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3457.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3401.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
3400.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2948.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
2896.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2358.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
2316.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2260.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2237.2
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2147.5
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
2070.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1947.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1876.8
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1862.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
1800.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
1686.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
1676.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1632.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
1631.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1596.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
1466.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
1462.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
1440.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
1429.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
1402.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1391.7
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
1391.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
1370.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1292.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1253.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1224.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1207.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
1113.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
1092.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
1075.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
1018.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
989.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
971.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
966.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
938.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
905.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
902.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
885.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
885.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
846.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
844.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
832.6
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
828.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
795.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
789.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
788.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
761.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
740.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
729.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
728.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
719.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
719.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
700.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
700.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
690.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
685.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
684.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
680.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
677.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
676.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
673.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
672.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
658.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
655.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
651.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
625.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
621.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
613.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
613.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
609.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
607.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
595.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
567.5
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
562.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
555.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
534.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
509.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
501.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
499.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
496.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
483.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
481.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
480.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
437.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
436.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
435.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
428.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
424.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
424.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
423.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
422.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
404.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
400.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
379.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
375.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
374.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
365.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
361.8
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
358.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
355.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
352.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
342.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
336.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
336.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
334.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
320.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
317.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
314.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
298.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
293.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
290.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
282.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
281.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
280.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
273.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
272.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
245.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
236.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
232.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
225.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
224.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
220.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
217.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
209.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
207.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
200.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
196.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
152.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
110.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
106.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
102.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
85.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
82.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
52.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
402.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 402.9
Samples: 4
Max nTPM: 512.8
Min nTPM: 306.2
Sample A
Male
512.8
Sample B
Male
306.2
Sample C
Female
366.5
Sample D
Female
425.9
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.