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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
58.4
nTPM
HPA Brain:
32.4
nTPM
GTEx:
58.4
nTPM
FANTOM5:
67.3
Scaled Tags Per Million
Pig:
6.5
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
32.4
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 28.0
2666
Male, age 74, left hemisphere
43.3
1870
Female, age 42, unknown
33.0
2411
Female, age 72, unknown
30.5
2586
Male, age 75, left hemisphere
27.4
1827
Male, age 72, unknown
26.7
2019
Male, age 18, unknown
25.9
1830
Male, age 51, unknown
24.8
2828
Female, age 72, unknown
23.3
2219
Male, age 76, both hemispheres
22.6
1833
Male, age 53, unknown
22.5
Dorsal raphe nucleus nTPM: 26.0
2750
Male, age 76, both hemispheres
32.1
1828
Male, age 53, unknown
28.1
2016
Female, age 72, unknown
26.6
2047
Male, age 72, unknown
21.9
2298
Female, age 72, unknown
21.2
Inferior colliculus nTPM: 22.8
1890
Male, age 53, unknown
26.4
2849
Male, age 72, unknown
24.1
2097
Female, age 72, unknown
20.7
1848
Female, age 42, unknown
20.1
Median raphe nucleus nTPM: 28.3
2220
Male, age 76, midline
28.3
Periaquaductal grey, anterior nTPM: 21.5
2502
Female, age 75, unknown
23.2
1947
Male, age 18, unknown
21.2
1795
Male, age 51, unknown
20.0
Periaquaductal grey, dorsal nTPM: 24.0
2850
Male, age 76, both hemispheres
26.8
1840
Male, age 53, unknown
24.7
1831
Male, age 72, unknown
24.6
2464
Female, age 72, unknown
19.8
Periaquaductal grey, lateral nTPM: 19.5
2140
Male, age 76, both hemispheres
24.1
2053
Male, age 18, unknown
21.6
2272
Male, age 74, both hemispheres
12.9
Pretectal area nTPM: 23.2
1815
Male, age 53, unknown
30.0
1816
Male, age 51, unknown
27.3
1817
Female, age 42, unknown
26.3
2007
Male, age 72, unknown
26.3
1944
Female, age 72, unknown
24.3
2825
Male, age 18, unknown
23.9
2316
Male, age 76, right hemisphere
23.1
2667
Female, age 75, unknown
22.2
2224
Female, age 72, unknown
20.7
2407
Male, age 75, both hemispheres
15.7
2273
Male, age 74, both hemispheres
15.2
Red nucleus nTPM: 32.4
2503
Female, age 72, unknown
40.6
1954
Female, age 42, unknown
36.0
2588
Male, age 74, left hemisphere
35.5
2725
Female, age 75, unknown
35.1
2823
Male, age 76, right hemisphere
34.1
1904
Male, age 53, unknown
33.6
1865
Male, age 51, unknown
33.4
2769
Male, age 72, unknown
30.5
2227
Male, age 72, unknown
30.1
1821
Female, age 72, unknown
29.0
2584
Male, age 75, left hemisphere
27.2
2785
Male, age 18, unknown
23.6
Substantia nigra nTPM: 32.3
1916
Female, age 42, unknown
43.3
2699
Male, age 18, unknown
39.6
2241
Male, age 72, unknown
37.9
2665
Male, age 74, both hemispheres
36.3
1851
Male, age 51, unknown
35.6
2409
Female, age 72, unknown
33.5
1889
Female, age 72, unknown
25.6
2583
Male, age 75, right hemisphere
24.9
1941
Male, age 53, unknown
23.4
2590
Female, age 75, unknown
23.3
Superior colliculus nTPM: 24.2
2668
Female, age 75, unknown
28.3
2587
Male, age 74, left hemisphere
26.7
1796
Male, age 53, unknown
26.1
2087
Female, age 72, unknown
24.2
1895
Male, age 76, right hemisphere
23.9
1913
Female, age 42, unknown
23.7
2261
Male, age 18, unknown
23.4
1839
Male, age 51, unknown
22.1
2664
Male, age 75, both hemispheres
22.0
1995
Male, age 72, unknown
21.3
Ventral tegmental area nTPM: 29.2
1915
Female, age 42, unknown
34.6
2223
Female, age 72, unknown
33.3
2410
Female, age 72, unknown
29.4
2218
Male, age 76, both hemispheres
27.4
1942
Male, age 51, unknown
26.6
2021
Male, age 53, unknown
24.3
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
58.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 58.4
Samples: 139
Max nTPM: 176.4
Min nTPM: 21.2
Std nTPM: 21.0
Median nTPM: 53.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
176.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
144.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
120.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
117.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
108.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
107.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
102.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
93.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
91.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
86.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
85.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
79.7
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
79.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
77.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
77.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
76.0
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
74.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
74.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
73.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
72.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
72.8
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
72.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
71.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
70.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
70.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
70.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
68.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
68.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
67.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
67.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
67.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
67.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
66.6
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
66.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
66.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
65.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
65.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
65.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
65.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
65.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
64.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
63.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
63.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
63.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
62.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
62.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
62.4
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
62.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
62.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
62.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
60.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
60.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
60.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
60.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
59.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
59.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
59.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
59.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
58.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
57.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
57.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
56.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
56.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
56.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
56.4
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
55.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
54.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
54.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
54.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
53.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
53.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
53.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
52.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
52.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
52.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
52.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
52.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
51.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
51.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
51.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
51.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
51.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
51.1
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
51.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
51.0
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
50.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
50.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
50.3
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
50.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
50.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
49.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
49.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
49.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
49.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
48.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
48.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
48.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
47.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
47.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
47.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
47.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
47.2
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
46.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
45.8
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
45.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
45.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
44.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
44.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
44.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
44.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
44.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
43.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
43.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
43.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
43.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
42.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
41.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
41.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
41.2
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
41.0
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
40.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
40.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
39.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
39.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
39.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
39.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
37.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
37.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
37.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
36.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
36.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
32.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
30.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
30.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
28.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
22.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
21.2
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.