| ARSE | CDPX CDPX1 | arylsulfatase E (chondrodysplasia punctata 1) | | | | | |
| ARSF | | arylsulfatase F | HPA000549
| | | 45 out of 63 cell types | Cytoplasm |
| ARSH | | arylsulfatase family, member H | | | | | |
| ARX | CT121 EIEE1 ISSX MRX29 MRX32 MRX33 MRX36 MRX38 MRX43 MRX54 MRX76 MRX87 MRXS1 PRTS | aristaless related homeobox | | | | | |
| ASB11 | DKFZp779E2460 | ankyrin repeat and SOCS box containing 11 | HPA000238
| | | 17 out of 66 cell types | Nucleus but not nucleoli |
| ASB12 | FLJ39577 | ankyrin repeat and SOCS box containing 12 | | | | | |
| ASB9 | DKFZP564L0862 FLJ20636 MGC4954 | ankyrin repeat and SOCS box containing 9 | HPA003014 HPA003060 CAB004997
|
| Reliability High | 3 out of 66 cell types | Nucleus but not nucleoli Cytoplasm |
| ASMT | ASMTY HIOMT HIOMTY | acetylserotonin O-methyltransferase | | | | | |
| ASMTL | | acetylserotonin O-methyltransferase-like | HPA003630 HPA021865
|
| Reliability Low | 64 out of 65 cell types | Cytoplasm |
| ATG4A | APG4A AUTL2 | ATG4 autophagy related 4 homolog A (S. cerevisiae) | HPA036374
| | | 61 out of 65 cell types | Cytoplasm Nucleoli Nucleus but not nucleoli Centrosome |
| ATP11C | ATPIG ATPIQ | ATPase, class VI, type 11C | HPA030830
| | | 18 out of 65 cell types | Cytoplasm Nucleoli |
| ATP1B4 | | ATPase, Na+/K+ transporting, beta 4 polypeptide | HPA044128
| | | 59 out of 63 cell types | |
| ATP2B3 | PMCA3 | ATPase, Ca++ transporting, plasma membrane 3 | HPA001583 CAB005607
|
| Reliability Low | 33 out of 66 cell types | Nucleoli Plasma membrane Golgi apparatus |
| ATP6AP1 | 16A Ac45 ATP6IP1 ATP6S1 CF2 ORF VATPS1 XAP-3 XAP3 | ATPase, H+ transporting, lysosomal accessory protein 1 | CAB015218
| | | 65 out of 65 cell types | |
| ATP6AP2 | APT6M8-9 ATP6IP2 ATP6M8-9 M8-9 | ATPase, H+ transporting, lysosomal accessory protein 2 | HPA003156
| | | 59 out of 62 cell types | Nucleus Cytoplasm |
| ATP7A | MNK | ATPase, Cu++ transporting, alpha polypeptide | HPA012887
| | | 58 out of 63 cell types | Vesicles |
| ATRX | JMS RAD54 XH2 XNP | alpha thalassemia/mental retardation syndrome X-linked | HPA001906 CAB009372
|
| Reliability High | 66 out of 66 cell types | |
| ATXN3L | MJDL | ataxin 3-like | HPA024123 HPA027539
|
| Reliability Low | 50 out of 65 cell types | Nucleus but not nucleoli Cytoplasm |
| AVPR2 | DIR DIR3 V2R | arginine vasopressin receptor 2 | | | | | |
| AWAT1 | DGAT2L3 | acyl-CoA wax alcohol acyltransferase 1 | | | | | |
| AWAT2 | DGAT2L4 MFAT | acyl-CoA wax alcohol acyltransferase 2 | | | | | |
| BCAP31 | 6C6-Ag BAP31 CDM DXS1357E | B-cell receptor-associated protein 31 | HPA003906 CAB015350 CAB015424
|
| Reliability High | 66 out of 66 cell types | Endoplasmic reticulum |
| BCOR | FLJ20285 KIAA1575 | BCL6 corepressor | | | | | |
| BCORL1 | CXorf10 FLJ11362 | BCL6 corepressor-like 1 | HPA031775 HPA031777
|
| Reliability Low | 51 out of 65 cell types | Nucleus but not nucleoli Cytoplasm Plasma membrane |
| BEND2 | CXorf20 MGC33653 | BEN domain containing 2 | HPA009420 HPA012769
|
| Reliability Very low | 43 out of 65 cell types | Cytoplasm Nucleus but not nucleoli Cytoskeleton (Intermediate filaments) |
| BEX1 | | brain expressed, X-linked 1 | | | | | |
| BEX2 | DJ79P11.1 | brain expressed X-linked 2 | | | | | |
| BEX4 | BEXL1 FLJ10097 | brain expressed, X-linked 4 | HPA045105
| | | 33 out of 65 cell types | |
| BEX5 | NGFRAP1L1 | brain expressed, X-linked 5 | | | | | |
| BGN | DSPG1 SLRR1A | biglycan | HPA003157 CAB003678
|
| Reliability Medium | 2 out of 66 cell types | Cytoplasm Endoplasmic reticulum Golgi apparatus Vesicles |
| BHLHB9 | KIAA1701 p60TRP | basic helix-loop-helix domain containing, class B, 9 | | | | | |
| BMP15 | GDF9B | bone morphogenetic protein 15 | | | | | |
| BMP2KL | | BMP2 inducible kinase-like | | | | | |
| BMX | ETK PSCTK3 | BMX non-receptor tyrosine kinase | HPA001048 CAB032495
|
| Reliability Low | 51 out of 65 cell types | Centrosome Cytoplasm |
| BRCC3 | BRCC36 C6.1A CXorf53 | BRCA1/BRCA2-containing complex, subunit 3 | | | | | |
| BRS3 | | bombesin-like receptor 3 | HPA003626
| | | 30 out of 64 cell types | |
| BRWD3 | FLJ38568 MRX93 | bromodomain and WD repeat domain containing 3 | HPA012802
| | | 49 out of 65 cell types | Cytoplasm |
| BTK | AGMX1 ATK IMD1 PSCTK1 XLA | Bruton agammaglobulinemia tyrosine kinase | HPA001198 HPA002028 CAB016689
|
| Reliability High | 10 out of 66 cell types | Vesicles |
| C1GALT1C1 | C1GALT2 COSMC | C1GALT1-specific chaperone 1 | HPA015632
| | | 65 out of 66 cell types | Cytoplasm |
| CA5B | | carbonic anhydrase VB, mitochondrial | HPA012618
| | | 56 out of 64 cell types | |
| CACNA1F | AIED Cav1.4 COD4 CORDX3 CSNB2 CSNB2A CSNBX2 JM8 JMC8 OA2 | calcium channel, voltage-dependent, L type, alpha 1F subunit | | | | | |
| CAPN6 | CalpM CANPX CAPNX | calpain 6 | HPA040383
| | | 49 out of 64 cell types | Cytoplasm |
| CASK | CAGH39 FGS4 LIN2 TNRC8 | calcium/calmodulin-dependent serine protein kinase (MAGUK family) | CAB001949 HPA023857
|
| Reliability Medium | 66 out of 66 cell types | Nucleus but not nucleoli Cytoplasm |
| CCDC120 | JM11 | coiled-coil domain containing 120 | HPA000561
| | | 51 out of 63 cell types | |
| CCDC160 | | coiled-coil domain containing 160 | HPA044684
| | | 65 out of 65 cell types | Nucleoli |
| CCDC22 | CXorf37 JM1 | coiled-coil domain containing 22 | HPA000888
| | | 3 out of 66 cell types | Cytoplasm Nucleus but not nucleoli |
| CCNB3 | | cyclin B3 | HPA000496
| | | 39 out of 64 cell types | Nucleus but not nucleoli |
| CD40LG | CD154 CD40L gp39 hCD40L HIGM1 IMD3 TNFSF5 TRAP | CD40 ligand | HPA045827
| | | 11 out of 65 cell types | |
| CD99 | MIC2 | CD99 molecule | CAB000020 HPA035304
|
| Reliability Low | 9 out of 66 cell types | Golgi apparatus Plasma membrane |
| CD99L2 | CD99B MIC2L1 | CD99 molecule-like 2 | HPA038782 HPA038783
|
| Reliability Low | 55 out of 65 cell types | Plasma membrane Golgi apparatus Cytoskeleton (Intermediate filaments) |