We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SOX8
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SOX8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:57.9 nTPM
HPA Brain:79.8 nTPM
GTEx:57.9 nTPM
FANTOM5:41.9 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:25.3 nTPM
Allen mouse:4.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.8
Sample id Sample description nTPM
Amygdala
nTPM: 66.3
2814 Male, age 76, right hemisphere 84.5
2695 Female, age 67, right hemisphere 74.3
2514 Male, age 75, right hemisphere 64.8
2517 Female, age 94, left hemisphere 58.9
1987 Female, age 91, left hemisphere 49.0
Basal amygdala
nTPM: 61.3
2827 Female, age 67, right hemisphere 85.5
2609 Male, age 75, right hemisphere 63.3
1955 Male, age 76, both hemispheres 61.4
2110 Male, age 80, left hemisphere 59.8
2685 Female, age 94, left hemisphere 53.5
2243 Female, age 91, right hemisphere 44.5
Central amygdala
nTPM: 66.8
1905 Male, age 76, both hemispheres 79.0
2826 Female, age 94, left hemisphere 68.7
2239 Male, age 80, left hemisphere 62.7
2515 Male, age 75, right hemisphere 62.6
2701 Female, age 91, right hemisphere 61.1
Corticomedial amygdala
nTPM: 47.5
2535 Female, age 67, right hemisphere 66.8
2428 Male, age 75, right hemisphere 52.8
2429 Female, age 94, left hemisphere 45.2
2829 Male, age 80, left hemisphere 45.1
2240 Male, age 76, both hemispheres 40.2
2242 Female, age 91, right hemisphere 34.5
Lateral amygdala
nTPM: 79.8
2830 Female, age 67, right hemisphere 102.2
2516 Male, age 75, right hemisphere 86.0
2534 Female, age 94, left hemisphere 76.5
1883 Male, age 76, both hemispheres 75.6
2256 Male, age 80, left hemisphere 73.1
2255 Female, age 91, right hemisphere 65.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 57.9
Samples: 181

Max nTPM: 185.3
Min nTPM: 16.6
Std nTPM: 27.4
Median nTPM: 52.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 185.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 133.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 128.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 126.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 117.8
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 115.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 113.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 112.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 111.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 110.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 107.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 105.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 104.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 104.2
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 100.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 99.5
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 97.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 96.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 94.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 93.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 92.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 91.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 91.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 91.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 89.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 87.5
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 86.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 86.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 84.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 82.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 81.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 80.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 80.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 79.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 79.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 77.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 77.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 76.6
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 76.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 75.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 73.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 73.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 73.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 72.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 72.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 71.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 71.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 71.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 70.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 69.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 68.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 68.6
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 68.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 67.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 67.8
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 67.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 67.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 67.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 66.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 63.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 63.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 62.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 62.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 61.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 61.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 60.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 59.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 59.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 59.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 59.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 58.2
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 57.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 57.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 57.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 56.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 55.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 54.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 54.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 54.6
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 54.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 54.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 54.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 53.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 52.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 52.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 49.8
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 49.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 49.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 48.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 48.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 48.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 48.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 48.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 47.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 47.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 46.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 45.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 45.1
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 45.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 44.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 43.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 42.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 42.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 42.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 42.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 42.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 41.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 40.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 40.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 40.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 39.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 39.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 39.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 39.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 39.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 38.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 38.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 37.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 37.8
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 37.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 37.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 37.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 37.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 37.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 37.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 36.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 36.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 36.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 36.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 35.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 35.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 35.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 35.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 34.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 33.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 32.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 32.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 32.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 31.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 31.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 30.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 30.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 30.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 30.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 30.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 30.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 30.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 29.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 29.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 29.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 28.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 28.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 28.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 28.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 27.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 27.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 27.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 26.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 26.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 25.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 24.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 24.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 23.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 23.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 22.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 21.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 17.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 16.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 41.9
FF:10151-102I7 76 years, female 41.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.6
Pig sample Sample description nTPM
Amygdala
nTPM: 35.6
Samples: 4

Max nTPM: 40.4
Min nTPM: 29.3
Sample A Female 36.6
Sample B Female 36.0
Sample C Male 40.4
Sample D Male 29.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 25.3
Samples: 4

Max nTPM: 25.8
Min nTPM: 25.0
Sample A Male 25.2
Sample B Male 25.8
Sample C Female 25.3
Sample D Female 25.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.1
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 4.6
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo