On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
92.6
nTPM
HPA Brain:
94.9
nTPM
GTEx:
92.6
nTPM
FANTOM5:
28.2
Scaled Tags Per Million
Macaque:
35.6
nTPM
Mouse:
44.1
nTPM
Rat:
54.6
nTPM
Pig:
95.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - Annotated protein expression
Pending normal tissue analysis
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
94.9
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 86.0
2734
Male, age 80, both hemispheres
113.0
2818
Female, age 79, both hemispheres
84.0
2819
Male, age 47, both hemispheres
75.5
2193
Male, age 75, both hemispheres
71.3
Cervical spinal cord, central gray nTPM: 71.7
2194
Female, age 79, both hemispheres
82.0
2816
Male, age 47, midline
75.7
1981
Female, age 72, midline
75.0
2565
Male, age 75, midline
68.9
2048
Male, age 55, midline
56.8
Cervical spinal cord, dorsal horn nTPM: 79.6
2296
Male, age 66, both hemispheres
132.0
2173
Female, age 72, unknown
103.1
2069
Male, age 47, both hemispheres
68.1
1877
Male, age 55, unknown
66.9
2721
Male, age 90, both hemispheres
54.6
2297
Male, age 75, both hemispheres
52.8
Cervical spinal cord, ventral horn nTPM: 82.4
2068
Male, age 55, unknown
98.9
2820
Female, age 79, both hemispheres
86.0
2480
Male, age 75, both hemispheres
82.9
2809
Male, age 90, both hemispheres
81.0
2295
Male, age 66, both hemispheres
80.0
2098
Female, age 72, unknown
65.6
Dorsal funiculus (white matter) nTPM: 94.9
2817
Male, age 47, both hemispheres
109.2
2810
Male, age 90, both hemispheres
105.9
2064
Female, age 79, both hemispheres
100.6
2812
Male, age 66, both hemispheres
80.4
2128
Male, age 75, both hemispheres
78.6
Lateral funiculus (white matter) nTPM: 89.3
2099
Male, age 90, both hemispheres
107.2
2094
Female, age 79, both hemispheres
99.9
2192
Male, age 75, both hemispheres
90.7
2294
Male, age 66, both hemispheres
59.2
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 92.6
Samples: 204
Max nTPM: 209.7
Min nTPM: 20.1
Std nTPM: 35.3
Median nTPM: 88.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
209.7
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
204.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
178.5
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
175.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
170.8
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
170.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
166.7
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
161.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
160.8
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
160.0
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
159.6
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
155.9
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
150.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
149.3
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
149.0
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
148.2
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
147.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
145.3
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
140.5
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
138.9
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
138.5
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
138.4
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
137.9
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
137.0
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
136.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
135.0
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
132.3
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
130.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
130.5
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
130.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
128.5
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
128.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
127.7
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
127.4
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
127.2
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
127.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
127.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
126.8
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
126.6
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
124.3
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
124.0
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
120.9
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
119.5
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
119.0
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
118.7
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
118.6
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
117.6
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
116.6
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
115.0
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
114.9
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
114.1
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
114.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
112.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
111.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
111.7
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
110.5
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
110.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
109.9
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
109.0
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
107.7
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
106.4
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
106.0
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
105.9
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
105.8
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
105.7
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
105.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
105.4
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
105.2
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
103.3
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
102.5
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
102.2
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
101.9
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
101.4
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
101.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
101.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
101.1
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
101.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
100.7
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
100.6
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
99.7
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
98.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
98.8
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
98.7
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
97.7
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
97.7
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
97.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
97.6
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
95.1
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
94.6
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
93.8
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
93.8
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
93.2
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
92.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
92.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
92.0
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
91.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
90.8
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
90.2
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
89.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
89.5
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
89.3
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
89.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
88.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
87.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
87.6
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
87.4
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
87.4
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
87.3
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
87.1
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
86.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
86.6
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
86.5
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
85.5
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
85.4
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
85.4
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
84.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
83.9
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
83.5
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
82.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
82.5
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
82.3
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
82.3
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
82.2
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
81.2
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
80.4
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
80.2
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
80.1
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
79.7
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
79.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
78.0
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
77.8
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
77.6
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
77.2
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
76.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
75.3
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
75.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
74.1
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
73.9
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
73.6
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
73.5
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
73.2
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
71.7
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
71.6
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
71.5
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
71.3
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
70.9
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
70.1
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
69.7
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
69.5
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
68.2
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
67.9
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
67.3
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
66.9
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
66.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
66.5
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
66.4
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
66.2
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
65.8
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
65.6
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
65.3
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
64.4
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
63.9
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
63.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
62.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
62.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
62.1
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
61.4
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
61.2
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
60.9
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
59.9
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
59.5
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
59.5
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
58.3
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
58.1
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
56.4
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
56.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
56.2
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
54.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
52.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
51.4
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
50.1
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
50.1
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
49.8
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
49.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
48.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
48.6
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
48.3
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
47.7
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
47.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
46.2
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
44.4
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
44.2
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
40.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
40.0
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
38.1
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
36.7
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
36.3
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
34.1
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
33.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
27.1
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
26.3
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
22.7
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
21.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
20.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
35.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 23.5
Samples: 2
Max nTPM: 42.1
Min nTPM: 4.8
Sample A
4.8
Sample B
42.1
Ventral spinal cord nTPM: 35.6
Samples: 1
Max nTPM: 35.6
Min nTPM: 35.6
Sample A
35.6
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
95.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 91.4
Samples: 4
Max nTPM: 103.6
Min nTPM: 81.9
Sample A
Female
83.3
Sample B
Female
81.9
Sample C
Male
103.6
Sample D
Male
96.9
Ventral spinal cord nTPM: 95.6
Samples: 4
Max nTPM: 105.2
Min nTPM: 82.0
Sample A
Female
105.2
Sample B
Female
82.0
Sample C
Male
90.1
Sample D
Male
105.0
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.1
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 44.1
Samples: 4
Max nTPM: 47.1
Min nTPM: 38.2
Sample A
38.2
Sample B
46.1
Sample C
45.1
Sample D
47.1
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
54.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 54.6
Samples: 4
Max nTPM: 59.8
Min nTPM: 46.1
Sample A
57.4
Sample A
59.8
Sample A
55.2
Sample A
46.1
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The Human Protein Atlas project is funded
