HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.0 nTPM
HPA Brain:70.9 nTPM
GTEx:72.0 nTPM
FANTOM5:25.9 Scaled Tags Per Million
Pig:40.1 nTPM
Mouse:23.8 nTPM
Allen mouse:3.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 70.9
Sample id Sample description nTPM
Hippocampus
nTPM: 50.9
1911 Female, age 85, right hemisphere 63.7
2529 Female, age 94, left hemisphere 55.0
2621 Female, age 67, right hemisphere 51.1
1855 Male, age 76, left hemisphere 48.3
2148 Female, age 91, left hemisphere 44.6
1898 Male, age 80, left hemisphere 42.9
Dentate gyrus
nTPM: 46.5
2530 Female, age 94, left hemisphere 67.5
2010 Male, age 76, both hemispheres 53.5
2528 Male, age 74, both hemispheres 47.7
2246 Female, age 85, both hemispheres 41.5
2531 Female, age 67, both hemispheres 37.0
1927 Female, age 91, both hemispheres 31.6
Entorhinal gyrus
nTPM: 60.6
2117 Female, age 91, right hemisphere 101.1
2764 Male, age 80, right hemisphere 75.5
2613 Female, age 94, left hemisphere 51.5
1787 Male, age 76, left hemisphere 49.8
1938 Female, age 85, left hemisphere 46.5
2686 Male, age 75, right hemisphere 39.2
Hippocampus, CA1
nTPM: 43.2
2527 Male, age 74, both hemispheres 53.8
2082 Female, age 91, right hemisphere 52.9
2749 Male, age 80, left hemisphere 43.3
1873 Female, age 85, both hemispheres 39.9
2045 Male, age 76, both hemispheres 26.1
Hippocampus, CA2
nTPM: 52.4
1963 Male, age 80, left hemisphere 64.5
2113 Female, age 91, right hemisphere 56.8
2437 Female, age 94, left hemisphere 56.1
2249 Male, age 74, both hemispheres 55.1
1940 Female, age 85, left hemisphere 51.2
1892 Male, age 76, both hemispheres 30.4
Hippocampus, CA3
nTPM: 36.2
1891 Female, age 85, both hemispheres 61.6
1867 Male, age 76, both hemispheres 48.9
2436 Male, age 74, both hemispheres 34.1
2137 Male, age 80, left hemisphere 28.0
2861 Female, age 67, both hemispheres 26.8
2620 Female, age 94, left hemisphere 17.5
Parahippocampal cortex
nTPM: 46.1
2532 Female, age 72, left hemisphere 66.6
2692 Male, age 74, both hemispheres 61.4
1990 Female, age 91, right hemisphere 53.5
2018 Male, age 76, both hemispheres 51.7
2245 Female, age 91, both hemispheres 47.6
1933 Female, age 85, both hemispheres 42.6
1850 Male, age 80, both hemispheres 38.8
2250 Female, age 67, right hemisphere 35.6
2622 Female, age 67, right hemisphere 31.7
2693 Female, age 94, both hemispheres 31.6
Perirhinal gyrus
nTPM: 32.5
2521 Female, age 94, right hemisphere 37.4
1794 Male, age 80, right hemisphere 35.1
2848 Male, age 76, right hemisphere 31.9
1847 Female, age 91, left hemisphere 30.7
1841 Female, age 85, right hemisphere 27.4
Subiculum
nTPM: 70.9
2042 Male, age 76, both hemispheres 97.6
1901 Male, age 80, both hemispheres 80.5
1977 Female, age 85, both hemispheres 71.8
2438 Female, age 94, left hemisphere 66.8
2619 Male, age 74, both hemispheres 56.9
2729 Female, age 91, right hemisphere 52.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 72.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.0
Samples: 255

Max nTPM: 301.7
Min nTPM: 15.9
Std nTPM: 40.7
Median nTPM: 61.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 301.7
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 229.7
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 215.8
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 198.0
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 192.5
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 183.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 182.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 166.6
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 165.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 159.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 151.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 25.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 25.9
FF:10153-102I9 76 years, female 44.6
FF:10169-103B7 60 years, female 7.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 40.1
Pig sample Sample description nTPM
Subiculum
nTPM: 31.0
Samples: 4

Max nTPM: 40.0
Min nTPM: 25.3
Sample A Female 40.0
Sample B Female 28.7
Sample C Male 29.9
Sample D Male 25.3
Dorsal hippocampus
nTPM: 40.1
Samples: 4

Max nTPM: 59.0
Min nTPM: 18.1
Sample A Female 59.0
Sample B Female 31.0
Sample C Male 52.3
Sample D Male 18.1
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 26.0
Min nTPM: 19.8
Sample A Female 19.8
Sample B Female 20.2
Sample C Male 26.0
Sample D Male 20.2
Ventral hippocampus
nTPM: 36.8
Samples: 4

Max nTPM: 42.9
Min nTPM: 22.1
Sample A Female 41.2
Sample B Female 22.1
Sample C Male 42.9
Sample D Male 40.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 23.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 27.5
Min nTPM: 16.7
Sample A Male 27.5
Sample B Male 23.4
Sample C Female 18.6
Sample D Female 16.7
Hippocampal formation
nTPM: 23.8
Samples: 4

Max nTPM: 26.5
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 22.6
Sample C Female 26.5
Sample D Female 25.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
74988736 Antisense, RP_060315_04_B04, Mouse strain C57BL/6J (56 days, male) 3.3
70593371 Antisense, RP_050407_04_B08, Mouse strain C57BL/6J (56 days, male) 3.1

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