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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:317.0 nTPM
HPA Brain:825.2 nTPM
GTEx:317.0 nTPM
FANTOM5:1009.5 Scaled Tags Per Million
Pig:129.1 nTPM
Mouse:323.0 nTPM
Allen mouse:16.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

825.2
Sample id Sample description nTPM
Amygdala
nTPM: 487.2
2517 Female, age 94, left hemisphere 615.4
2514 Male, age 75, right hemisphere 550.8
1987 Female, age 91, left hemisphere 532.7
2814 Male, age 76, right hemisphere 386.5
2695 Female, age 67, right hemisphere 350.3
Basal amygdala
nTPM: 825.2
2243 Female, age 91, right hemisphere 1065.8
2827 Female, age 67, right hemisphere 963.1
2110 Male, age 80, left hemisphere 845.8
2685 Female, age 94, left hemisphere 831.3
2609 Male, age 75, right hemisphere 740.1
1955 Male, age 76, both hemispheres 505.2
Central amygdala
nTPM: 635.6
2826 Female, age 94, left hemisphere 922.9
2239 Male, age 80, left hemisphere 867.6
2515 Male, age 75, right hemisphere 583.9
2701 Female, age 91, right hemisphere 465.9
1905 Male, age 76, both hemispheres 337.6
Corticomedial amygdala
nTPM: 810.0
2829 Male, age 80, left hemisphere 1014.2
2535 Female, age 67, right hemisphere 965.8
2242 Female, age 91, right hemisphere 874.5
2429 Female, age 94, left hemisphere 735.7
2428 Male, age 75, right hemisphere 721.7
2240 Male, age 76, both hemispheres 547.9
Lateral amygdala
nTPM: 693.2
2534 Female, age 94, left hemisphere 971.7
2256 Male, age 80, left hemisphere 813.1
2830 Female, age 67, right hemisphere 762.7
2255 Female, age 91, right hemisphere 656.6
2516 Male, age 75, right hemisphere 523.6
1883 Male, age 76, both hemispheres 431.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

317.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 317.0
Samples: 181

Max nTPM: 909.9
Min nTPM: 82.7
Std nTPM: 154.5
Median nTPM: 278.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 909.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 740.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 739.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 698.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 678.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 634.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 613.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 610.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 606.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 605.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 599.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 589.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 547.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 536.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 531.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 529.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 529.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 528.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 523.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 522.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 508.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 507.4
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 507.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 502.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 500.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 498.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 495.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 494.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 484.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 484.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 484.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 483.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 480.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 476.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 469.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 469.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 451.2
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 450.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 449.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 447.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 446.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 446.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 444.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 436.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 431.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 420.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 419.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 417.0
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 404.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 395.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 392.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 391.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 390.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 390.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 390.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 386.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 382.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 367.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 363.8
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 363.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 362.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 362.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 352.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 351.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 350.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 349.6
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 344.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 343.9
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 338.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 337.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 336.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 335.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 328.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 325.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 323.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 313.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 312.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 312.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 307.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 294.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 294.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 293.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 290.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 288.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 284.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 284.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 283.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 282.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 280.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 278.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 276.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 273.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 272.2
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 271.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 270.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 265.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 264.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 264.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 263.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 262.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 261.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 261.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 260.5
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 259.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 257.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 254.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 252.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 247.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 245.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 244.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 243.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 240.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 237.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 237.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 236.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 231.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 231.3
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 229.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 229.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 221.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 220.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 220.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 219.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 215.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.3
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 210.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 208.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 208.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 206.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 203.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 203.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 203.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 203.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 198.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 196.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 195.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 188.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 186.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 184.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 184.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 180.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 179.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 173.9
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 172.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 170.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 168.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 167.4
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 165.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 162.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 160.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 158.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 155.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 155.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 154.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 151.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 151.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 150.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 150.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 147.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 146.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 146.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 145.9
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 139.4
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 135.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 130.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 129.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 127.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 121.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 121.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 117.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 113.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 108.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 106.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 104.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 98.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 94.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 82.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1009.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1009.5
FF:10151-102I7 76 years, female 1009.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.1
Pig sample Sample description nTPM
Amygdala
nTPM: 129.1
Samples: 4

Max nTPM: 168.3
Min nTPM: 87.3
Sample A Female 168.3
Sample B Female 87.3
Sample C Male 125.6
Sample D Male 135.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

323.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 323.0
Samples: 4

Max nTPM: 328.4
Min nTPM: 314.5
Sample A Male 314.5
Sample B Male 328.4
Sample C Female 324.1
Sample D Female 324.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.1
73994671 Antisense, RP_051214_03_E06, Mouse strain C57BL/6J (56 days, male) 18.6
69735222 Antisense, RP_050503_02_C12, Mouse strain C57BL/6J (56 days, male) 13.5

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