On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
72.7
nTPM
HPA Brain:
321.8
nTPM
GTEx:
72.7
nTPM
FANTOM5:
297.9
Scaled Tags Per Million
Macaque:
454.6
nTPM
Mouse:
70.6
nTPM
Rat:
99.2
nTPM
Pig:
109.7
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
2673
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
4949
Spinal cord_03
1339
Spinal cord_04
4231
Spinal cord_05
1914
Spinal cord_06
ND
Spinal cord_07
1403
Spinal cord_08
3432
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
321.8
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 222.6
2819
Male, age 47, both hemispheres
275.7
2734
Male, age 80, both hemispheres
216.9
2193
Male, age 75, both hemispheres
209.1
2818
Female, age 79, both hemispheres
188.8
Cervical spinal cord, central gray nTPM: 295.7
2565
Male, age 75, midline
405.4
2194
Female, age 79, both hemispheres
331.7
1981
Female, age 72, midline
268.8
2816
Male, age 47, midline
258.9
2048
Male, age 55, midline
213.9
Cervical spinal cord, dorsal horn nTPM: 321.8
2297
Male, age 75, both hemispheres
423.6
1877
Male, age 55, unknown
366.5
2721
Male, age 90, both hemispheres
347.3
2069
Male, age 47, both hemispheres
332.5
2173
Female, age 72, unknown
252.3
2296
Male, age 66, both hemispheres
208.9
Cervical spinal cord, ventral horn nTPM: 314.9
2480
Male, age 75, both hemispheres
440.8
2068
Male, age 55, unknown
335.9
2820
Female, age 79, both hemispheres
322.4
2809
Male, age 90, both hemispheres
310.7
2295
Male, age 66, both hemispheres
308.7
2098
Female, age 72, unknown
170.7
Dorsal funiculus (white matter) nTPM: 182.3
2812
Male, age 66, both hemispheres
223.8
2128
Male, age 75, both hemispheres
207.2
2810
Male, age 90, both hemispheres
180.8
2817
Male, age 47, both hemispheres
151.0
2064
Female, age 79, both hemispheres
148.7
Lateral funiculus (white matter) nTPM: 198.2
2294
Male, age 66, both hemispheres
233.6
2192
Male, age 75, both hemispheres
193.4
2094
Female, age 79, both hemispheres
193.2
2099
Male, age 90, both hemispheres
172.8
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.7
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 72.7
Samples: 204
Max nTPM: 198.5
Min nTPM: 39.7
Std nTPM: 19.8
Median nTPM: 70.1
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
198.5
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
183.0
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
141.3
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
126.8
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
121.8
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
118.6
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
112.4
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
109.8
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
109.1
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
105.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
104.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
102.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
101.9
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
98.2
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
95.6
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
95.1
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
94.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
94.5
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
93.7
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
93.1
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
92.5
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
92.3
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
91.3
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
91.0
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
90.0
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
89.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
89.2
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
88.8
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
88.6
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
88.6
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
86.9
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
86.1
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
85.9
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
85.7
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
85.5
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
85.4
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
84.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
84.8
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
84.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
83.8
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
83.5
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
83.4
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
81.2
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
80.8
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
80.7
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
80.6
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
80.0
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
79.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
79.5
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
79.4
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
78.7
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
78.4
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
78.4
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
78.3
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
78.2
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
78.0
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
77.6
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
77.5
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
77.3
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
77.3
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
77.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
77.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
76.6
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
76.6
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
76.5
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
76.4
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
76.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
76.3
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
76.2
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
76.2
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
76.2
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
75.8
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
75.6
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
75.6
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
75.0
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
74.8
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
74.4
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
74.2
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
73.9
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
73.8
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
73.7
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
73.3
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
73.2
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
73.1
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
73.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
72.9
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
72.6
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
72.6
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
72.4
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
72.0
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
71.8
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
71.8
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
71.7
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
71.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
71.4
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
71.3
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
71.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
71.1
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
71.1
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
70.5
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
70.5
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
70.5
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
69.8
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
69.5
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
69.3
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
69.1
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
69.0
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
68.9
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
68.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
68.4
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
68.4
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
68.3
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
68.3
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
68.2
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
68.1
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
68.1
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
68.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
68.0
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
67.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
67.4
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
67.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
67.2
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
67.0
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
66.9
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
66.6
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
66.5
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
66.3
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
66.1
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
66.0
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
66.0
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
65.4
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
65.0
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
64.6
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
64.2
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
64.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
63.8
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
63.6
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
63.5
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
63.4
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
63.3
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
63.2
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
62.9
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
62.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
62.0
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
61.9
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
61.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
61.6
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
61.2
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
61.0
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
60.9
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
60.8
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
60.6
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
60.2
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
59.8
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
59.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
59.2
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
58.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
58.9
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
58.7
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
58.4
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
58.2
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
58.2
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
58.1
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
58.0
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
57.9
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
57.8
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
57.7
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
57.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
56.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
56.6
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
56.5
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
56.5
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
56.4
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
56.3
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
56.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
56.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
56.1
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
55.9
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
55.7
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
55.6
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
55.2
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
54.9
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
54.5
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
53.4
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
53.3
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
52.9
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
52.6
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
51.8
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
50.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
50.6
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
50.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
50.5
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
50.0
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
49.1
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
48.9
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
48.7
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
48.6
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
47.4
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
47.2
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
44.8
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
44.6
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
44.6
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
44.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
39.7
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
454.6
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 454.7
Samples: 2
Max nTPM: 486.5
Min nTPM: 422.8
Sample A
486.5
Sample B
422.8
Ventral spinal cord nTPM: 305.0
Samples: 1
Max nTPM: 305.0
Min nTPM: 305.0
Sample A
305.0
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.7
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 107.1
Samples: 4
Max nTPM: 115.8
Min nTPM: 94.0
Sample A
Female
115.8
Sample B
Female
94.0
Sample C
Male
114.6
Sample D
Male
104.1
Ventral spinal cord nTPM: 109.7
Samples: 4
Max nTPM: 125.2
Min nTPM: 101.3
Sample A
Female
125.2
Sample B
Female
101.3
Sample C
Male
110.0
Sample D
Male
102.4
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.6
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 70.6
Samples: 4
Max nTPM: 80.2
Min nTPM: 60.4
Sample A
80.2
Sample B
60.4
Sample C
66.7
Sample D
74.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
99.2
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 99.2
Samples: 4
Max nTPM: 104.9
Min nTPM: 93.3
Sample A
97.0
Sample A
104.9
Sample A
101.5
Sample A
93.3
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The Human Protein Atlas project is funded
