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  • GPM6B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:430.0 nTPM
HPA Brain:568.5 nTPM
GTEx:430.0 nTPM
FANTOM5:1127.2 Scaled Tags Per Million
Pig:644.8 nTPM
Mouse:598.9 nTPM
Allen mouse:20.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

568.5
Sample id Sample description nTPM
Amygdala
nTPM: 568.5
2514 Male, age 75, right hemisphere 731.8
1987 Female, age 91, left hemisphere 607.1
2517 Female, age 94, left hemisphere 550.3
2695 Female, age 67, right hemisphere 477.9
2814 Male, age 76, right hemisphere 475.5
Basal amygdala
nTPM: 441.9
2609 Male, age 75, right hemisphere 589.8
2110 Male, age 80, left hemisphere 540.5
2685 Female, age 94, left hemisphere 426.1
2243 Female, age 91, right hemisphere 423.7
1955 Male, age 76, both hemispheres 402.7
2827 Female, age 67, right hemisphere 268.8
Central amygdala
nTPM: 463.5
2515 Male, age 75, right hemisphere 570.2
2826 Female, age 94, left hemisphere 508.2
1905 Male, age 76, both hemispheres 453.6
2239 Male, age 80, left hemisphere 450.4
2701 Female, age 91, right hemisphere 335.3
Corticomedial amygdala
nTPM: 455.8
2428 Male, age 75, right hemisphere 625.4
2829 Male, age 80, left hemisphere 517.0
2242 Female, age 91, right hemisphere 486.1
2429 Female, age 94, left hemisphere 475.7
2240 Male, age 76, both hemispheres 345.9
2535 Female, age 67, right hemisphere 284.9
Lateral amygdala
nTPM: 457.5
2516 Male, age 75, right hemisphere 657.0
1883 Male, age 76, both hemispheres 484.4
2256 Male, age 80, left hemisphere 468.9
2534 Female, age 94, left hemisphere 464.7
2255 Female, age 91, right hemisphere 372.4
2830 Female, age 67, right hemisphere 297.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

430.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 430.0
Samples: 181

Max nTPM: 900.1
Min nTPM: 167.1
Std nTPM: 120.6
Median nTPM: 417.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 900.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 721.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 717.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 711.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 693.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 691.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 679.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 659.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 649.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 644.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 637.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 623.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 610.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 608.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 596.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 596.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 592.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 578.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 577.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 577.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 577.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 568.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 567.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 562.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 560.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 558.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 553.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 552.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 550.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 545.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 544.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 544.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 543.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 543.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 541.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 538.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 535.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 532.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 530.6
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 527.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 527.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 523.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 520.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 517.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 514.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 512.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 512.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 510.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 508.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 494.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 492.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 490.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 489.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 489.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 485.5
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 483.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 483.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 480.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 479.1
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 477.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 477.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 472.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 472.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 470.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 467.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 465.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 465.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 464.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 462.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 458.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 456.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 455.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 451.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 451.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 447.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 445.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 440.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 440.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 439.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 439.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 431.7
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 429.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 428.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 427.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 426.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 425.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 423.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 422.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 421.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 418.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 417.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 416.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 415.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 414.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 412.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 412.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 410.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 407.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 403.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 401.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 400.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 399.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 398.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 397.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 394.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 390.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 388.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 387.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 384.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 382.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 381.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 381.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 380.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 379.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 376.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 375.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 372.5
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 368.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 364.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 361.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 360.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 359.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 356.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 355.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 355.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 354.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 354.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 348.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 347.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 345.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 345.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 344.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 343.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 342.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 341.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 339.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 339.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 338.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 336.8
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 335.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 334.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 331.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 330.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 329.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 327.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 325.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 323.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 319.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 318.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 317.5
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 316.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 315.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 315.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 312.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 311.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 304.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 304.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 303.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 302.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 298.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 296.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 293.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 291.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 291.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 284.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 283.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 283.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 271.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 264.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 264.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 259.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 256.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 253.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 247.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 246.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 224.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 223.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 219.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 211.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 201.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 167.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1127.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1127.2
FF:10151-102I7 76 years, female 1127.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

644.8
Pig sample Sample description nTPM
Amygdala
nTPM: 644.9
Samples: 4

Max nTPM: 706.5
Min nTPM: 594.5
Sample A Female 652.2
Sample B Female 706.5
Sample C Male 594.5
Sample D Male 626.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

598.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 598.9
Samples: 4

Max nTPM: 653.4
Min nTPM: 531.1
Sample A Male 531.1
Sample B Male 605.3
Sample C Female 653.4
Sample D Female 605.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.2
544520 Antisense, RP_040324_01_G06, Mouse strain C57BL/6J (56 days, male) 21.3
74357593 Antisense, RP_060117_01_A08, Mouse strain C57BL/6J (56 days, male) 19.1

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