On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
364.8
nTPM
HPA Brain:
640.9
nTPM
GTEx:
364.8
nTPM
FANTOM5:
1491.2
Scaled Tags Per Million
Macaque:
491.1
nTPM
Mouse:
206.1
nTPM
Rat:
402.6
nTPM
Pig:
549.6
nTPM
MIDBRAIN - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - MIDBRAIN, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Inhibitory (GAD1/2) RORB+ K
c-2
Excitatory (VGLUT1) ETV1+ Z...
c-3
Inhibitory (GAD1/2) RORB+ K
c-4
Inhibitory (GAD1/2) RORB+ K
c-5
Unassigned
c-6
Tectum Excitatory (VGLUT2)
c-7
Inhibitory (GAD1/2)
c-8
Inhibitory (GAD1/2) TFAP2B+
c-9
Excitatory (VGLUT2)
c-10
Excitatory (VGLUT2)
c-11
Tectum Inhibitory (GAD1/2)
c-12
Excitatory (VGLUT2) TFAP2B+
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2)
c-15
Tectum Excitatory (VGLUT2)
c-16
Excitatory (VGLUT2)
c-17
Inhibitory (GAD1/2)
c-18
Excitatory (VGLUT2)
c-19
Inhibitory (GAD1/2)
c-20
Inhibitory (GAD1/2)
c-21
Excitatory (VGLUT2)
c-22
Excitatory (VGLUT2)
c-23
Inhibitory (GAD1/2) TFAP2B+
c-24
Inhibitory (GAD1/2)
c-25
Excitatory (VGLUT2) CRH+ CA...
c-26
Inhibitory (GAD1/2) SST+
c-27
Inhibitory (GAD1/2) NPY+
c-28
Inhibitory (GAD1/2) RORB+ K
c-29
Excitatory (VGLUT2) TFAP2B+
c-30
Excitatory (VGLUT2)
c-31
Dopaminergic TH+ LMX1A+ SLC...
c-32
Inhibitory (GAD1/2) PVALB+
c-33
Tegmentum Excitatory (VGLUT...
c-34
Excitatory (VGLUT2) LMX1A+
c-35
Tegmentum Inhibitory (GAD2)...
c-36
TPH2+
c-37
Inhibitory (GAD1/2) CXCL14+
c-38
Excitatory (VGLUT1) SATB2+
c-39
Inhibitory (GAD1/2) RORB+ K
c-40
Excitatory (VGLUT2) MEIS2+
c-41
Inhibitory (GAD1/2) TFAP2B+
c-42
Excitatory (VGLUT2)
c-43
Excitatory (VGLUT1)
c-44
SN Monoaminergic Inhibitory...
c-45
Inhibitory (GAD1/2)
c-46
Excitatory (VGLUT1) GRP+
c-47
Inhibitory (GAD1/2) PVALB+ ...
c-48
Excitatory (VGLUT1)
c-49
Inhibitory (GAD1/2) LAMP5+
c-50
Excitatory (VGLUT2) KIT+
c-51
Excitatory (VGLUT1) SLC5A7+
c-52
Inhibitory (GAD1/2) NOS1+ G...
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - MIDBRAIN, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Microglia
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Astrocytes
c-7
Oligodendrocytes
c-8
Oligodendrocytes
c-9
Oligodendrocytes
c-10
Oligodendrocytes
c-11
Oligodendrocytes
c-12
Astrocytes
c-13
Fibroblasts
c-14
NK-cells & T-cells
c-15
Macrophages
c-16
Ependymal cells
c-17
Capillary endothelial cells
c-18
Pericytes
c-19
Oligodendrocyte progenitor ...
c-20
Immature oligodendrocytes
c-21
Vascular smooth muscle cell
c-22
Oligodendrocyte progenitor ...
c-23
B-cells & Monocytes doublet
c-24
Arterial endothelial cells
c-25
CD44+ Mural cells
c-26
Bergmann glia
c-27
Oligodendrocytes & Lymphocy
c-28
Macrophages & Monocytes
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
640.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 526.7
1870
Female, age 42, unknown
702.7
2019
Male, age 18, unknown
635.6
2411
Female, age 72, unknown
616.3
2828
Female, age 72, unknown
609.8
1833
Male, age 53, unknown
573.7
1830
Male, age 51, unknown
569.6
1827
Male, age 72, unknown
442.5
2586
Male, age 75, left hemisphere
384.6
2219
Male, age 76, both hemispheres
379.2
2666
Male, age 74, left hemisphere
353.4
Dorsal raphe nucleus nTPM: 551.1
2750
Male, age 76, both hemispheres
698.8
2016
Female, age 72, unknown
604.6
2298
Female, age 72, unknown
570.3
1828
Male, age 53, unknown
462.9
2047
Male, age 72, unknown
418.8
Inferior colliculus nTPM: 428.6
2097
Female, age 72, unknown
451.4
1890
Male, age 53, unknown
450.5
1848
Female, age 42, unknown
447.6
2849
Male, age 72, unknown
364.9
Median raphe nucleus nTPM: 417.2
2220
Male, age 76, midline
417.2
Periaquaductal grey, anterior nTPM: 446.8
2502
Female, age 75, unknown
482.3
1795
Male, age 51, unknown
430.3
1947
Male, age 18, unknown
427.8
Periaquaductal grey, dorsal nTPM: 433.1
2464
Female, age 72, unknown
473.6
2850
Male, age 76, both hemispheres
440.2
1831
Male, age 72, unknown
432.3
1840
Male, age 53, unknown
386.4
Periaquaductal grey, lateral nTPM: 461.2
2053
Male, age 18, unknown
487.2
2272
Male, age 74, both hemispheres
466.0
2140
Male, age 76, both hemispheres
430.3
Pretectal area nTPM: 462.6
2273
Male, age 74, both hemispheres
640.0
2316
Male, age 76, right hemisphere
560.7
2407
Male, age 75, both hemispheres
536.2
2667
Female, age 75, unknown
516.7
1815
Male, age 53, unknown
490.8
2224
Female, age 72, unknown
463.1
2825
Male, age 18, unknown
430.7
1817
Female, age 42, unknown
424.7
2007
Male, age 72, unknown
382.6
1944
Female, age 72, unknown
331.6
1816
Male, age 51, unknown
311.9
Red nucleus nTPM: 640.9
1904
Male, age 53, unknown
795.7
2227
Male, age 72, unknown
775.8
2769
Male, age 72, unknown
763.6
1865
Male, age 51, unknown
747.3
1821
Female, age 72, unknown
745.9
1954
Female, age 42, unknown
693.6
2823
Male, age 76, right hemisphere
664.7
2785
Male, age 18, unknown
649.4
2503
Female, age 72, unknown
643.2
2588
Male, age 74, left hemisphere
421.0
2725
Female, age 75, unknown
412.5
2584
Male, age 75, left hemisphere
378.8
Substantia nigra nTPM: 428.2
1851
Male, age 51, unknown
508.6
2699
Male, age 18, unknown
480.7
2590
Female, age 75, unknown
456.8
2583
Male, age 75, right hemisphere
454.4
1889
Female, age 72, unknown
447.9
2409
Female, age 72, unknown
447.6
1916
Female, age 42, unknown
401.8
1941
Male, age 53, unknown
400.5
2241
Male, age 72, unknown
395.0
2665
Male, age 74, both hemispheres
288.9
Superior colliculus nTPM: 507.7
1913
Female, age 42, unknown
723.8
1995
Male, age 72, unknown
717.3
2668
Female, age 75, unknown
560.4
2587
Male, age 74, left hemisphere
521.0
1895
Male, age 76, right hemisphere
475.8
1839
Male, age 51, unknown
468.4
2664
Male, age 75, both hemispheres
440.6
1796
Male, age 53, unknown
420.0
2087
Female, age 72, unknown
401.4
2261
Male, age 18, unknown
348.7
Ventral tegmental area nTPM: 526.8
2223
Female, age 72, unknown
729.8
2410
Female, age 72, unknown
533.1
2021
Male, age 53, unknown
515.8
1942
Male, age 51, unknown
513.8
1915
Female, age 42, unknown
436.8
2218
Male, age 76, both hemispheres
431.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
364.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 364.8
Samples: 183
Max nTPM: 794.8
Min nTPM: 83.9
Std nTPM: 127.7
Median nTPM: 340.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
794.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
749.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
743.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
724.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
680.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
679.2
GTEX-1LKK1-0011-R2b-SM-G8OLT
50-59 years, female
656.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
653.3
GTEX-1N5O9-0011-R2a-SM-G8LM1
60-69 years, male
627.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
575.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
570.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
566.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
565.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
562.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
561.4
GTEX-1R9K4-0011-R2b-SM-G8LLF
60-69 years, male
561.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
558.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
557.5
GTEX-1192X-0011-R2b-SM-GI4VV
50-59 years, male
552.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
531.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
521.2
GTEX-ZAK1-0011-R2a-SM-GPRX1
50-59 years, female
517.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
516.4
GTEX-1LSVX-0011-R2a-SM-G8OL9
60-69 years, male
511.9
GTEX-ZYY3-0011-R2a-SM-GNTB2
60-69 years, female
511.9
GTEX-1117F-0011-R2b-SM-GI4VL
60-69 years, female
509.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
508.2
GTEX-1JJ6O-0011-R2a-SM-EY5ZO
60-69 years, male
507.4
GTEX-15SHU-0011-R2a-SM-GPRXS
40-49 years, female
502.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
500.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
494.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
494.0
GTEX-1JN1M-0011-R2b-SM-G9EPE
60-69 years, female
491.1
GTEX-1NV5F-0011-R2a-SM-G8LME
60-69 years, female
486.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
460.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
458.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
455.8
GTEX-1POEN-0011-R2b-SM-G8LLP
30-39 years, female
449.5
GTEX-ZAJG-0011-R2a-SM-GNTAX
50-59 years, female
449.2
GTEX-1PWST-0011-R2b-SM-F3K5I
70-79 years, male
440.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
439.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
438.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
435.9
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
434.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
431.4
GTEX-1KWVE-0011-R2a-SM-G8OLX
30-39 years, male
431.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
427.5
GTEX-1MJK2-0011-R2b-SM-EXUS5
50-59 years, male
426.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
425.9
GTEX-QVJO-0011-R2A-SM-2S1QK
60-69 years, female
424.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
420.2
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
419.4
GTEX-1RDX4-0011-R2b-SM-F649Z
50-59 years, female
417.8
GTEX-15G19-0011-R2b-SM-H6Q7S
60-69 years, male
413.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
412.8
GTEX-1R9PO-0011-R2a-SM-F2TBH
60-69 years, female
406.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
405.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
404.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
403.6
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
402.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
391.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
391.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
390.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
389.9
GTEX-1JMPZ-0011-R2a-SM-G8LLS
30-39 years, male
385.5
GTEX-11TTK-0011-R2b-SM-GJ3PU
60-69 years, female
383.9
GTEX-16GPK-0011-R2a-SM-GRR1F
60-69 years, male
383.1
GTEX-1KD5A-0011-R2b-SM-G9EPP
50-59 years, male
382.8
GTEX-1MCQQ-0011-R2a-SM-F649V
60-69 years, male
382.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
380.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
379.4
GTEX-1O9I2-0011-R2b-SM-F3K53
50-59 years, male
378.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
378.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
378.1
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
375.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
372.7
GTEX-12696-0011-R2b-SM-GHWPY
60-69 years, male
370.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
368.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
364.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
362.3
GTEX-1NV8Z-0011-R2b-SM-F648N
60-69 years, male
361.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
357.8
GTEX-1LG7Y-0011-R2b-SM-G8LMM
50-59 years, male
356.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
356.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
355.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
352.8
GTEX-1RQEC-0011-R2b-SM-EY5ZT
60-69 years, male
351.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
350.0
GTEX-1JMQJ-0011-R2a-SM-F6493
50-59 years, male
345.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
343.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
342.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
340.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
340.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
338.0
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
338.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
336.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
334.0
GTEX-1P4AB-0011-R2a-SM-F649K
50-59 years, male
333.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
332.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
330.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
330.6
GTEX-1I19N-0011-R2b-SM-GPRYG
70-79 years, male
327.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
327.1
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
327.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
326.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
322.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
321.9
GTEX-1CB4J-0011-R2a-SM-9WG5N
60-69 years, male
321.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
320.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
319.0
GTEX-1QMI2-0011-R2b-SM-F648R
60-69 years, male
314.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
312.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
311.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
309.9
GTEX-1PIIG-0011-R2b-SM-F648W
30-39 years, male
309.5
GTEX-WL46-0011-R2A-SM-3LK6O
50-59 years, male
307.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
307.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
306.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
306.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
305.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
303.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
300.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
298.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
297.5
GTEX-1RQED-0011-R2a-SM-F3K5T
60-69 years, male
295.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
288.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
287.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
286.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
286.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
286.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
284.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
283.8
GTEX-1PPGY-0011-R2b-SM-F33YW
60-69 years, male
282.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
278.7
GTEX-1N2EF-0011-R2b-SM-F6482
60-69 years, male
277.6
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
275.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
273.0
GTEX-RN5K-0011-R2A-SM-GQ1CA
50-59 years, female
271.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
269.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
268.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
268.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
267.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
266.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
266.2
GTEX-WVLH-0011-R2A-SM-3MJFJ
50-59 years, male
264.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
264.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
257.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
256.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
255.7
GTEX-1IDJH-0011-R2a-SM-GPI9D
70-79 years, male
255.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
254.2
GTEX-1N2EE-0011-R2a-SM-F649F
60-69 years, male
249.7
GTEX-13OVL-0011-R2b-SM-H65ZN
50-59 years, male
247.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
240.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
240.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
236.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
236.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
236.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
235.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
230.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
230.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
228.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
228.2
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
228.0
GTEX-13OW7-0011-R2b-SM-H6Q8E
50-59 years, male
226.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS
40-49 years, female
222.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
221.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
221.7
GTEX-ZZPT-0011-R2a-SM-GNTB1
50-59 years, male
220.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
217.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
216.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
215.8
GTEX-1KD4Q-0011-R2a-SM-F649I
40-49 years, male
215.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
212.2
GTEX-11NUK-0011-R2a-SM-GINAO
50-59 years, male
197.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
196.9
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
185.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
170.5
GTEX-111FC-0011-R2a-SM-GIN8S
60-69 years, male
167.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
166.1
GTEX-117XS-0011-R2b-SM-GI4VT
60-69 years, male
151.0
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
111.4
GTEX-X4EP-0011-R2B-SM-3P625
60-69 years, female
83.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
491.1
Macaque sample
Sample description
nTPM
Substantia nigra nTPM: 491.1
Samples: 1
Max nTPM: 491.1
Min nTPM: 491.1
Sample A
491.1
Midbrain nTPM: 369.5
Samples: 1
Max nTPM: 369.5
Min nTPM: 369.5
Sample A
369.5
Superior colliculi nTPM: 363.5
Samples: 1
Max nTPM: 363.5
Min nTPM: 363.5
Sample A
363.5
MIDBRAIN - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
549.6
Pig sample
Sample description
nTPM
Substantia nigra nTPM: 549.6
Samples: 3
Max nTPM: 616.0
Min nTPM: 472.4
Sample A
Female
616.0
Sample B
Female
472.4
Sample C
Male
560.4
Midbrain nTPM: 508.3
Samples: 3
Max nTPM: 651.6
Min nTPM: 414.8
Sample B
Female
651.6
Sample C
Male
458.6
Sample D
Male
414.8
Periaqueductal gray nTPM: 543.2
Samples: 3
Max nTPM: 621.1
Min nTPM: 496.7
Sample B
Female
621.1
Sample C
Male
511.7
Sample D
Male
496.7
Superior colliculi nTPM: 491.8
Samples: 4
Max nTPM: 588.9
Min nTPM: 264.3
Sample A
Female
566.3
Sample B
Female
264.3
Sample C
Male
547.7
Sample D
Male
588.9
MIDBRAIN - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
206.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 206.1
Samples: 4
Max nTPM: 214.4
Min nTPM: 192.6
Sample A
211.7
Sample B
192.6
Sample C
205.8
Sample D
214.4
MIDBRAIN - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
402.6
Rat sample
Sample description
nTPM
Midbrain nTPM: 402.6
Samples: 4
Max nTPM: 414.7
Min nTPM: 388.7
Sample A
388.7
Sample A
399.0
Sample A
414.7
Sample A
408.1
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The Human Protein Atlas project is funded
