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  • ATP9A
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:39.8 nTPM
HPA Brain:184.7 nTPM
GTEx:39.8 nTPM
FANTOM5:99.6 Scaled Tags Per Million
Pig:94.0 nTPM
Mouse:195.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

184.7
Sample id Sample description nTPM
Amygdala
nTPM: 160.5
1987 Female, age 91, left hemisphere 179.3
2514 Male, age 75, right hemisphere 179.0
2695 Female, age 67, right hemisphere 158.5
2517 Female, age 94, left hemisphere 153.0
2814 Male, age 76, right hemisphere 132.6
Basal amygdala
nTPM: 184.7
2609 Male, age 75, right hemisphere 239.0
2243 Female, age 91, right hemisphere 212.7
2110 Male, age 80, left hemisphere 200.0
2685 Female, age 94, left hemisphere 173.3
1955 Male, age 76, both hemispheres 147.4
2827 Female, age 67, right hemisphere 135.6
Central amygdala
nTPM: 175.2
2515 Male, age 75, right hemisphere 235.8
2239 Male, age 80, left hemisphere 186.3
2701 Female, age 91, right hemisphere 170.8
2826 Female, age 94, left hemisphere 160.2
1905 Male, age 76, both hemispheres 123.0
Corticomedial amygdala
nTPM: 184.2
2428 Male, age 75, right hemisphere 224.6
2829 Male, age 80, left hemisphere 220.9
2242 Female, age 91, right hemisphere 192.8
2429 Female, age 94, left hemisphere 175.2
2240 Male, age 76, both hemispheres 150.9
2535 Female, age 67, right hemisphere 140.9
Lateral amygdala
nTPM: 167.5
2516 Male, age 75, right hemisphere 216.0
2256 Male, age 80, left hemisphere 168.7
2534 Female, age 94, left hemisphere 167.5
2255 Female, age 91, right hemisphere 159.7
2830 Female, age 67, right hemisphere 150.9
1883 Male, age 76, both hemispheres 142.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

39.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 39.8
Samples: 181

Max nTPM: 76.8
Min nTPM: 21.5
Std nTPM: 9.7
Median nTPM: 38.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 76.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 68.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 63.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 62.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 62.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 61.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 60.9
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 60.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 60.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 57.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 56.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 54.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 54.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 54.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 53.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 52.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 51.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 51.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.9
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 49.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 49.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 49.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 49.1
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 49.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 48.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 48.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 47.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 47.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 46.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 46.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 46.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 46.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 46.2
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 46.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 45.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 45.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 45.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 45.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 45.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 45.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 45.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 45.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 45.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 44.9
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 44.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 44.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 44.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 44.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 44.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 44.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 44.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 43.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 43.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 43.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 43.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 42.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 42.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 42.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 42.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 42.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 42.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 41.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 41.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 41.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 41.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 41.5
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 41.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 41.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 41.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 40.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 40.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 40.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 39.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 39.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 39.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 39.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 39.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 39.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 38.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 38.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 38.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 38.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 38.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 38.5
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 38.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 38.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 38.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 38.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 38.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 37.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 37.5
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 37.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 37.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 37.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 37.2
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 37.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 37.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 37.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 36.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 36.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 36.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 36.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 36.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 35.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 35.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 35.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 35.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 35.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 35.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 34.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 34.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 34.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 34.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 34.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 34.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 33.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 33.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 33.8
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 33.6
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 33.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 33.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 33.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 32.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 32.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 32.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 32.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 32.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 32.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 32.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 32.3
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 32.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 32.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 32.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 32.1
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 31.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 31.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 31.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 31.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 31.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 30.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 29.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 29.7
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 29.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 29.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 29.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 29.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 28.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 28.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 28.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 28.0
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 27.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 27.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 27.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 27.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 27.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 27.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 26.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 26.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 25.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 24.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 24.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 24.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 23.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 23.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 22.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 21.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 99.6
FF:10151-102I7 76 years, female 99.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.0
Pig sample Sample description nTPM
Amygdala
nTPM: 94.0
Samples: 4

Max nTPM: 130.0
Min nTPM: 72.5
Sample A Female 130.0
Sample B Female 72.5
Sample C Male 85.1
Sample D Male 88.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 195.8
Samples: 4

Max nTPM: 215.9
Min nTPM: 178.9
Sample A Male 215.9
Sample B Male 178.9
Sample C Female 201.0
Sample D Female 187.4

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