MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.7 nTPM
HPA Brain:189.4 nTPM
GTEx:34.7 nTPM
FANTOM5:55.9 Scaled Tags Per Million
Pig:94.1 nTPM
Mouse:141.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 160.5
2586 Male, age 75, left hemisphere 232.0
1827 Male, age 72, unknown 190.3
2411 Female, age 72, unknown 174.5
2666 Male, age 74, left hemisphere 161.2
1870 Female, age 42, unknown 152.6
1833 Male, age 53, unknown 151.6
2828 Female, age 72, unknown 150.6
1830 Male, age 51, unknown 142.7
2219 Male, age 76, both hemispheres 138.5
2019 Male, age 18, unknown 111.4
Dorsal raphe nucleus
nTPM: 154.3
2047 Male, age 72, unknown 174.3
2298 Female, age 72, unknown 173.8
2750 Male, age 76, both hemispheres 152.4
1828 Male, age 53, unknown 137.8
2016 Female, age 72, unknown 133.2
Inferior colliculus
nTPM: 155.9
2849 Male, age 72, unknown 170.2
1848 Female, age 42, unknown 163.3
2097 Female, age 72, unknown 154.0
1890 Male, age 53, unknown 135.8
Median raphe nucleus
nTPM: 160.7
2220 Male, age 76, midline 160.7
Periaquaductal grey, anterior
nTPM: 189.4
1947 Male, age 18, unknown 203.0
2502 Female, age 75, unknown 191.8
1795 Male, age 51, unknown 173.2
Periaquaductal grey, dorsal
nTPM: 154.6
1840 Male, age 53, unknown 184.6
2464 Female, age 72, unknown 152.2
2850 Male, age 76, both hemispheres 150.4
1831 Male, age 72, unknown 131.3
Periaquaductal grey, lateral
nTPM: 145.6
2140 Male, age 76, both hemispheres 164.9
2053 Male, age 18, unknown 157.7
2272 Male, age 74, both hemispheres 114.1
Pretectal area
nTPM: 149.1
2825 Male, age 18, unknown 174.8
1816 Male, age 51, unknown 172.9
2007 Male, age 72, unknown 160.9
2224 Female, age 72, unknown 155.2
2407 Male, age 75, both hemispheres 155.1
1944 Female, age 72, unknown 150.3
1815 Male, age 53, unknown 147.8
1817 Female, age 42, unknown 142.5
2316 Male, age 76, right hemisphere 137.0
2273 Male, age 74, both hemispheres 126.5
2667 Female, age 75, unknown 117.6
Red nucleus
nTPM: 122.8
2584 Male, age 75, left hemisphere 152.9
2588 Male, age 74, left hemisphere 152.9
2725 Female, age 75, unknown 139.9
1821 Female, age 72, unknown 126.6
2503 Female, age 72, unknown 120.5
2785 Male, age 18, unknown 119.7
2769 Male, age 72, unknown 117.0
1954 Female, age 42, unknown 116.5
2227 Male, age 72, unknown 115.4
1865 Male, age 51, unknown 110.3
1904 Male, age 53, unknown 109.0
2823 Male, age 76, right hemisphere 93.4
Substantia nigra
nTPM: 166.3
1941 Male, age 53, unknown 192.3
1916 Female, age 42, unknown 180.5
2590 Female, age 75, unknown 177.2
2583 Male, age 75, right hemisphere 173.4
2241 Male, age 72, unknown 170.0
2665 Male, age 74, both hemispheres 166.5
1851 Male, age 51, unknown 164.3
1889 Female, age 72, unknown 156.5
2699 Male, age 18, unknown 144.9
2409 Female, age 72, unknown 137.6
Superior colliculus
nTPM: 151.2
2664 Male, age 75, both hemispheres 193.5
2261 Male, age 18, unknown 176.5
1796 Male, age 53, unknown 169.3
1839 Male, age 51, unknown 166.6
2668 Female, age 75, unknown 150.6
2087 Female, age 72, unknown 145.1
1895 Male, age 76, right hemisphere 139.5
2587 Male, age 74, left hemisphere 133.7
1913 Female, age 42, unknown 123.0
1995 Male, age 72, unknown 114.1
Ventral tegmental area
nTPM: 158.6
2218 Male, age 76, both hemispheres 163.7
1942 Male, age 51, unknown 163.2
2410 Female, age 72, unknown 162.7
1915 Female, age 42, unknown 159.9
2223 Female, age 72, unknown 153.7
2021 Male, age 53, unknown 148.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.7
Samples: 183

Max nTPM: 71.9
Min nTPM: 9.1
Std nTPM: 10.0
Median nTPM: 32.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 71.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 71.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 70.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 61.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 58.6
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 56.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 55.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 54.2
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 52.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 52.4
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 52.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 55.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 55.9
FF:10158-103A5 76 years, female 55.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 94.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.9
Samples: 4

Max nTPM: 117.2
Min nTPM: 67.3
Sample A Female 117.2
Sample B Female 67.3
Sample C Male 106.6
Sample D Male 68.6
Midbrain
nTPM: 94.1
Samples: 4

Max nTPM: 109.5
Min nTPM: 78.3
Sample A Female 90.9
Sample B Female 78.3
Sample C Male 109.5
Sample D Male 97.7
Periaqueductal gray
nTPM: 73.9
Samples: 3

Max nTPM: 87.3
Min nTPM: 63.2
Sample B Female 71.1
Sample C Male 87.3
Sample D Male 63.2
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 95.6
Min nTPM: 48.8
Sample A Female 95.6
Sample B Female 48.8
Sample C Male 83.6
Sample D Male 85.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 143.8
Min nTPM: 139.4
Sample A Male 140.6
Sample B Male 139.4
Sample C Female 141.4
Sample D Female 143.8

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